Gene Spro_4012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSpro_4012 
SymbolpdhR 
ID5604674 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSerratia proteamaculans 568 
KingdomBacteria 
Replicon accessionNC_009832 
Strand
Start bp4451469 
End bp4452233 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content57% 
IMG OID640939572 
Producttranscriptional regulator PdhR 
Protein accessionYP_001480235 
Protein GI157372246 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.152194 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.323384 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCTACA GCAAAATCCG CCAACCCAAG TTGTCAGACG TCATCGAGCA GCAGCTCGAA 
CACCTGATCC TCGAGGGAAC ACTGCGTCCA GGCGAAAAAC TGCCACCGGA GCGTGAACTG
GCGAAACAAT TTGATGTTTC CCGTCCTTCT CTGAGAGAGG CTATCCAGCG CCTGGAAGCC
AAAGGGTTGC TCCTGCGCCG TCAGGGCGGT GGCACCTTTG TACAAACTAA TCTGTGGCAG
AGCTTTAGCG ATCCGCTGGC TGAACTGCTG GCCGACCATC CTGAATCACA ATTCGATCTG
TTGGAAACCC GTCATGCCCT CGAAGGCATT GCTGCCTATT ACGCGGCGTT GCGCGGTACC
GACGAAGATC TGGCACGCAT CCGCGATTGC CATATGCTGA TTCAGCAGGC CCAGGACAGC
GGCGATCTCG ACGCCGAAGC CGACGCGGTC ATGCAATACC AAATCGCCGT GACCGAAGCT
GCCCACAACG TTGTGTTACT GCACCTGCTG CGCTGTATGG GGCCGATGCT GGAACAGAAC
GTCCGTCAGA ACTTTGAATT GCTCTACTCG CGCCGTGAGA TGTTGGCAAA AGTGAGCAGC
CACCGCGCCG GAATTTTTGA GGCGATTGTG GCACGCGAGC CAGAAAAAGC TCGTGAAGCC
TCGCACCGCC ATTTGGCGTT TATCGAGGAA ATCTTGCTGG ATCTCAGTCG GGAGCATACC
CGACGCGAGA GATCGCTGCG GCGTCTCCAG CAACGCAAGG ATTAA
 
Protein sequence
MAYSKIRQPK LSDVIEQQLE HLILEGTLRP GEKLPPEREL AKQFDVSRPS LREAIQRLEA 
KGLLLRRQGG GTFVQTNLWQ SFSDPLAELL ADHPESQFDL LETRHALEGI AAYYAALRGT
DEDLARIRDC HMLIQQAQDS GDLDAEADAV MQYQIAVTEA AHNVVLLHLL RCMGPMLEQN
VRQNFELLYS RREMLAKVSS HRAGIFEAIV AREPEKAREA SHRHLAFIEE ILLDLSREHT
RRERSLRRLQ QRKD