| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spro_2818 |
|---|
| Symbol | |
|---|
| ID | 5602652 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Serratia proteamaculans 568 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009832 |
|---|
| Strand | - |
|---|
| Start bp | 3098944 |
|---|
| End bp | 3100335 |
|---|
| Gene Length | 1392 bp |
|---|
| Protein Length | 463 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640938359 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001479047 |
|---|
| Protein GI | 157371058 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.561944 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000285964 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGGCAAGCT TGAATCAACA TCAAAAATCG GTCCTGATGG CGACCAGCCT CAGTTATGTC
ATCGTTATTC TCGATACTTC GATTGTAAAC GTTGCTCTGC CGTCGATCGC TGGCGAACTT
GGGGCAGGGT TGAGTGGCCT GCAGTGGGTA GTCAATGCCT ACACGTTGGC GTTTGCCAGC
CTGTTACTGA GCGGCGGAGC ACTGGGGGAT CGGTTGGGGG CCACAAGGCT ATACCTTGGC
GGGCTGGCGG TTTTTGCCGG CGCTTCGGTC ATTTGCGGCC TGGCTGAAAC CCTGCCCGTA
CTGGTGGCGG CCAGAGTCTG CCAGGGGGTT GGCGCCGCGT TGCTGGTACC CAGTTCATTG
ATGCTGCTTA ATGCGGCATT CGGCGATGCC AGGCTGCGGG CAGGGGCGAT TGGCGTGTGG
GCCGGATGTG GTGGCGTGGC GATGGCGGCG GGACCGCTGG TCGGCGGCTT GCTTATCGAA
CTATGGGGCT GGCGCAGCCT GTTTTGGATC AATCTTCCGG TGATTGTGCT GGGGATAGGT
CTTACCCTGC GAATTGAAGT TCGGCGTCCG GTACCGGCCT TGCGACAAAT GGATTATGCC
GGGCAGGGCG CGGTGATCCT GGCGTTAGCC AGCTCAGTGT GGGTGCTGAT CGAAGGCACC
AGGCTTGGCT GGTGTTCTGG CTGGATCCTC GGCGGTATGG CTATCGCTGC TCTGAGTTGG
TGGCGATTTG TGGTTATCGA ACGGCGGCAC CGGCAGCCGA TGCTGCCGCT GACATTGTTC
CGTAGCACCC TGTTTTCTGC CTCTGCGCTG GTTTCGTTAG TCTCGGCGCT GGTGTTCTAC
GGCGTATTTT TTCTGCTTAG CCTCTATTTT CAGCGGGTGC GAGGCTGGAC GCCATTACAG
TCTGGCCTGG CGTTTCTCCC CCTGACGATG ATGGTCACGC TGGGCAGTTT TATTTCTGGC
AGGCTGGTGC GGGCATGGGG GGGCGGGCGA GTGGTTTATT GCAGTTTGTT GCTCTATGCG
CTGGGTTTTG TCGGTTTACT GGCGCTGGCG GAAAGCCCGC CCTACTGGCG CATTGCCTTG
TCTTTTCCGT TGCTTGGTCT GGCGGCCGGT ATCATTACCC CGGCGGCCAC ATCGGCATTG
ATGAATGATG TCGCGAATGA ACGGGCGGGG ATTGCAGCCG GCGTACTCAA TGCCGCCCGT
CAGAGCGGTT CGGCCTTTGG CGTGGCCATC TTTGGGGCGC TGATGTCGAC CTCCCTTTCG
CAGGCCGGCG GTATTCAGAC TGCGGTGTAC GGTGCCCTTG GGCTGTCATT ATTCACCGCC
ATTGGTTGGC GTTTAGCGAT AAATTTAGCG GCTCGTCCAG GTGCGTCGGT GAGGAATGAG
CAAAGAGAGT GA
|
|---|
| Protein sequence | MASLNQHQKS VLMATSLSYV IVILDTSIVN VALPSIAGEL GAGLSGLQWV VNAYTLAFAS
LLLSGGALGD RLGATRLYLG GLAVFAGASV ICGLAETLPV LVAARVCQGV GAALLVPSSL
MLLNAAFGDA RLRAGAIGVW AGCGGVAMAA GPLVGGLLIE LWGWRSLFWI NLPVIVLGIG
LTLRIEVRRP VPALRQMDYA GQGAVILALA SSVWVLIEGT RLGWCSGWIL GGMAIAALSW
WRFVVIERRH RQPMLPLTLF RSTLFSASAL VSLVSALVFY GVFFLLSLYF QRVRGWTPLQ
SGLAFLPLTM MVTLGSFISG RLVRAWGGGR VVYCSLLLYA LGFVGLLALA ESPPYWRIAL
SFPLLGLAAG IITPAATSAL MNDVANERAG IAAGVLNAAR QSGSAFGVAI FGALMSTSLS
QAGGIQTAVY GALGLSLFTA IGWRLAINLA ARPGASVRNE QRE
|
|---|
| |