| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4502 |
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| Symbol | |
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| ID | 5612490 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5507251 |
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| End bp | 5508180 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 640935479 |
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| Product | hypothetical protein |
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| Protein accession | YP_001476232 |
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| Protein GI | 157377632 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3318] Predicted metal-binding protein related to the C-terminal domain of SecA |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000195351 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAATTAG ATGAGATAAT TACTACTCTG AGTCGTGGCG ACTTAACAGA ACTTCCGGTT
GAAGCCTTGT TGGCGGCCAG GCTGCAGTGG TCTGAGTTAC TGCCTGTTAT CGAGGAGTTG
ATACAGAAGT TTATTGCTAA TGAGGCATTG ACCGATCCTG AGTCCAATCT TCTCTTCTTC
GGCATCTGTC TTATTGTCGA CCGGAAGCAG TTTAGTTGTT TCGACTCCTT GATAAATCTT
ACCAACAAGG ATGACTGTAA TGCGCCATTA GATAACCTTC TTGGTGACTT TATTGGTTCT
GAACTTTCCA CTGCTTACTA TATTTTGGCG CAAGGTAACC CTGAGCAACT GTGTTTCTTG
GTTAACTCTG AGCAAGCGGG TGAAATTGTT AAGATGGGCG CCCTATGTGC GCTATTTTGT
CAGTTGCATA CAGGGCAAAT TGATAGAGAG ACACTTAATC AAAGTATTCC GGGTTTTATC
GACAATCTCG TCAAATATAA TCACTCAATA GCACTTTTTG AGTTGGTTAA TCTTTTGATA
TCAAATGAAT TTAATCATTA CCATAGTCAA TGTGTAGGTC TTGTTGAGAG TAATATAATT
GACGAGGGTA AAATTGAGAA TCAGTGCATC ATTGATTGGG ATAATCAGTC TATCGGTTTT
TCAGAGTGGG AGAGTGGCCT GATAAGCGGC GATTATGATG TGATTGATTC TCTTAGCCAG
TGGGCAGGTT TCAACGCGGA ATCTGAGATG AATGATGAGG ACCTCATGGC CGTTTTCGAT
GATTTGATGA ATACGCCAAG GGAACTCGAC GATAGGTATT TTGAGAGCCT CGATAATCAG
CAACCATTTA TTGCAGATAT CCAACCAGGC CGTAATGACC CTTGTCCCTG CGGGAGTGGC
AAGAAATTCA AGAAGTGCTG TTTGAATTAA
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| Protein sequence | MKLDEIITTL SRGDLTELPV EALLAARLQW SELLPVIEEL IQKFIANEAL TDPESNLLFF
GICLIVDRKQ FSCFDSLINL TNKDDCNAPL DNLLGDFIGS ELSTAYYILA QGNPEQLCFL
VNSEQAGEIV KMGALCALFC QLHTGQIDRE TLNQSIPGFI DNLVKYNHSI ALFELVNLLI
SNEFNHYHSQ CVGLVESNII DEGKIENQCI IDWDNQSIGF SEWESGLISG DYDVIDSLSQ
WAGFNAESEM NDEDLMAVFD DLMNTPRELD DRYFESLDNQ QPFIADIQPG RNDPCPCGSG
KKFKKCCLN
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