| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4478 |
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| Symbol | |
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| ID | 5612957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5480254 |
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| End bp | 5481159 |
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| Gene Length | 906 bp |
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| Protein Length | 301 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935455 |
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| Product | naphthoate synthase |
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| Protein accession | YP_001476208 |
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| Protein GI | 157377608 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0447] Dihydroxynaphthoic acid synthase |
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| TIGRFAM ID | [TIGR01929] naphthoate synthase (dihydroxynaphthoic acid synthetase) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.275536 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000359766 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGAGTCAGC AGGTTTCAGA CATTTTTGAT CCCACACTAT GGGATCAAGT TTCCGGGTTT
GATTTTGAAG ATATCACCTA CCACAGAGCC AAAGATCAAG GCACTGTACG TATCGCGATA
AACCGCCCAG AGTGTAGAAA CTCCTTCCGC CCCAAAACAG TTGATGAACT ATACACAGCA
TTAAACCATG CAAGACAATG GTCAGATGTA GGTTGTGTAC TGTTAACCGG TAATGGTCCA
TCGGCAAAAG ATGGTGGCTG GGCATTTTGT GCCGGCGGCG ATCAACGTAT TCGTGGCAAA
GATGGCTATA AATATGAAGG CGCCGAACAG GGTACACCTG ACCTAGCCCG CATGGGGCGT
CTTCACATAC TCGAAGTACA ACGTTTAATT CGATTTATGC CGAAAGTCGT TATTGCGGTT
GTTCCCGGTT GGGCCGTTGG TGGTGGCCAC AGCCTACACG TCGTCTGTGA CCTCACTTTA
GCATCTAAAG AACATGCAAT CTTTAAGCAG ACCGATCCCG ATGTAGGTAG TTTCGATTCC
GGTTATGGCA GTGCTTACCT TGCAAAAATG GTTGGACAGA AACGCGCTCG AGAAATTTTC
TTCCTTGGAT TTAACTACTC TGCCGATGAA GCGTTCGACA TGGGTATGGT AAACCGTTCA
ATTCCTCATG CGGAACTTGA AACCGAAGCC CTAAACTGGG CCAGAGAGAT CAACTCAAAA
TCTCCCACGG CAATGCGTAT GCTTAAGTAC GGCTTTAACC TACCCGATGA TGGTCTTGTT
GGTCAGCAGC TGTTTGCCGG TGAAGCCACC CGACTTGCCT ACGGCACCGA CGAAGCACAA
GAGGGGCGGG ATTCCTTCCT TGAGAAGCGA GATCAGGATT TCTCTGATTT CCCATGGCAC
TATTGA
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| Protein sequence | MSQQVSDIFD PTLWDQVSGF DFEDITYHRA KDQGTVRIAI NRPECRNSFR PKTVDELYTA
LNHARQWSDV GCVLLTGNGP SAKDGGWAFC AGGDQRIRGK DGYKYEGAEQ GTPDLARMGR
LHILEVQRLI RFMPKVVIAV VPGWAVGGGH SLHVVCDLTL ASKEHAIFKQ TDPDVGSFDS
GYGSAYLAKM VGQKRAREIF FLGFNYSADE AFDMGMVNRS IPHAELETEA LNWAREINSK
SPTAMRMLKY GFNLPDDGLV GQQLFAGEAT RLAYGTDEAQ EGRDSFLEKR DQDFSDFPWH
Y
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