| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4442 |
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| Symbol | |
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| ID | 5611471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5428304 |
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| End bp | 5429566 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935412 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_001476172 |
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| Protein GI | 157377572 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0668] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGATCAAG AATTAAGATT ACAGATCTCT CAGTGGTTAT CGGACTGGGG GGTAAACAGT
ACGCCATCGG ATGGTGTTTC CACATCGGTA TTGGTCTTTG CCAGCTTGGT GCTGGCAATG
ATCGCCTACC TGATTGTCAG GAGAGGTGTC GTCCGTACGA TGAACATCGT CATCCAGCGC
TCTAAAGTTA ACTGGGACGA TATCTTCATG GGGCACAATG TGTTGGAGAA GTTTTCCTAT
ATCGTGCCGG CGCTGGTGCT CGACCTTCTG TTACCCATCG CGCTCACCGA ACATCATCTG
ATGAGCTCTC TGATGGATCG CCTGCTGAGT GTGAGTATCG TTATCATACT TATCCGCGCG
GTATATAGTG CCCTGGATGC CTTCAATGAG ATTGCCGATG TAAATCTGGT CAGTCGACGG
CTTCCCATAA AGAGTTTCGT GCAGCTGTTT AAGTTATTCC TCTTCTTTGT GGCCGTCATC
ATCTCCATCT CGGTGATTGC GGATCAGTCT CCGCTCTACT TCCTCAGCGG TTTAGGTGTC
GCGACTGGTT TGGTTATGTT GGTCTTCAGG GACACTATCT TAGGGTTTGT CGCTGGGATA
CAGTTGGCGG CGAACCGCAT GGTGAGCACC GGCGATTGGA TCCAGATGGA TAAATATGGG
GCCGATGGTG CGGTTGAAGA GGTCTCTTTG ACGACCGTTA AGGTGCGTAA CTGGGATCAG
ACCATCACTA TGATCCCCGC CTATGCCCTG GTCTCTGACG CATTTAAAAA CTGGCGCGGC
ATGTCTGAGT CCGGTGGACG ACGCATTAAG CGTTCTGTCT CCATCGACAT TCACTCGATC
GGCTTCCTCT CTGAAGAGGA GAGAGTTCGC CTCAGTAAGA TCAATCATCT TAAGGCCTAC
TTTGCGGCTA AGAATGATGA GTTAGCCGAC TTCAATAGTC AGGTCGATGA TGCCGATATG
CCTGTTAACA GTCGACAATT GACGAATATC GGTACTTTTA GGGCCTATTT GAAGGAGTTC
GTGAGTAATC ACGACAAGAT CCATAAAGAT ATGACCCTGC TGGTGCGTCA GTTAGCGCCG
ACATCGGAAG GGGTACCGAT AGAGATCTAT ATCTTTACCA ACGATACCCG TTGGGGGTTC
TATGAAGGAA TTCAGGGGGA TATCTTCGAT CATATCTTTG CCATATTACC GGAGTTCGGC
TTGAGGGTTT TCCAGGGACC GACAGGTTCA GATATCAGGA GTTTGAAAGC CGATAAGCGT
TAA
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| Protein sequence | MDQELRLQIS QWLSDWGVNS TPSDGVSTSV LVFASLVLAM IAYLIVRRGV VRTMNIVIQR
SKVNWDDIFM GHNVLEKFSY IVPALVLDLL LPIALTEHHL MSSLMDRLLS VSIVIILIRA
VYSALDAFNE IADVNLVSRR LPIKSFVQLF KLFLFFVAVI ISISVIADQS PLYFLSGLGV
ATGLVMLVFR DTILGFVAGI QLAANRMVST GDWIQMDKYG ADGAVEEVSL TTVKVRNWDQ
TITMIPAYAL VSDAFKNWRG MSESGGRRIK RSVSIDIHSI GFLSEEERVR LSKINHLKAY
FAAKNDELAD FNSQVDDADM PVNSRQLTNI GTFRAYLKEF VSNHDKIHKD MTLLVRQLAP
TSEGVPIEIY IFTNDTRWGF YEGIQGDIFD HIFAILPEFG LRVFQGPTGS DIRSLKADKR
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