| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4434 |
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| Symbol | |
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| ID | 5609642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5419390 |
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| End bp | 5421546 |
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| Gene Length | 2157 bp |
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| Protein Length | 718 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640935404 |
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| Product | glycoside hydrolase family protein |
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| Protein accession | YP_001476164 |
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| Protein GI | 157377564 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3408] Glycogen debranching enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000698524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCTCTT GCCTCCTGCT CTGTATTTCA AGCCTCACGG CACAGACTTC TGCCGATTAT
CATGATCTGC TTCCCTATCA AGGTACTCCG ACCTCTATGG AGGAGCGGGA TGGAAAGGGA
AACTTAGTTA TCCCCGCCAC CTATGTGGAT CAGGGAGCAT GGCATGGCTT TCACCTCCCC
GACACACCTG AGTATTTTGG CAGCTTTACC GGTCCCCTGT TTATCGCTCA GGAGTACAGC
CTTCATCTGA GTGACAGCCT GCAGAGGTTG TCGCTTAAGA ATATGGATAG CGGCAAAATC
TTAGATTTTG CTCAGGCAAC AGAGAGTCGG CTCTTTAGTC GTCCCGATGC GTTAGTTCAG
CAATTTCGAT GGCCCGAACT CTCATTGGAG ATGAGTCTGA GTTATAGCGA TAACCGTACC
TCGGTGATCC GCACCCGGCT CATTAATAAC ACTATGAGTC CGCAACATTG GCAGCTTAGC
TGGTCCGGCG TTCCCTTTAG CTCTCATCCA AAACTTCCTG AGCATAGGGT CATTAAGCGG
CTCGATAGCT GGAAAACGGG AATAAGATGG CGCCTTAATT CCGTCATGGA AACCTGGCAG
ATGCAGTTAG CCGATGCCGA ATATGAGATC TGGTTTGACC GTGAGATGCG GATCGAGCTG
TCACAGGAGC AGGGGTACCA AGCTTCCACA TCAATTATCT CTCTGGCTGG CGGCGAACAT
AAGGAGTTCT TGAGTGCCCA GCGCTATTTT CATACTAAAG CCGAGCGCAT CTCACATGGG
ATACCCGAGT GGAATGAGAT AGGCAGGGCA CTGGATACGA ATCGAGGGCG CTGGCAGCGG
AGAATCGACC GGGCTATCTC GGGTGGCGAT CTGGCCTATC GCAAGATGGC CGTGAAGAGC
ATGCTGACCC TGATGCATAA CTGGCGCAGT CCGGCCGGGG CACTGCTGCA TGATGCGGTG
ACGCCATCGG TCACCTATAA ATGGTTCAAT GGTGTCTGGG CGTGGGATAG CTGGAAACAA
GCTGTGGCCT TGTCCCATTT CGATACCGAC TTGGCCAAGT CTAATGTACT GGCTATGTTT
GACTACCAAT TTACCGTCGA GGACAGGGTG CGGCCACAAG ATGCCGGTAG CCTGCCCGAT
GCCATTTTTT ACAATAAAGA TCCAGCCAGG GGCGGAGAAG GGGGCAACTG GAATGAGCGC
AACGGTAAAC CGCCGCTGGC GACCTGGGCG GTGTGGGAGA TCTATCAACA GAGTGGCGAC
CTTGAGTTTG TTGAGCTCAT GTACCCTAAA CTGGTGGCCT ACCATCAGTG GTGGTACCGC
AATCGTGATC ACAACGGCAA TGGCCTCGCC GAATACGGTG CTAACCTGCA TCCTGCGCAC
TTCAAAGACG GTAAACCGTT GCGCGGCGCG ATAATCGAGG CGGCAGCATG GGAATCCGGC
ATGGATAATG CCCCCAGATT CGATGATGAT GCCAGCGTAC AGGTGCTGAA AAATCTTGAT
GAGAATGGCA AACTCATAGG TTTTTCTCTG TCTCAGGAGT CGGTGGATCT TAATGCTTAC
CTGTTTGCTG AAAAAGAGCT GCTGGCCAGG ATGGCTAAGT TGCAAGGGCT CGATAGGGAG
TCTAGCCGCT GGGCGGGTGA GGCGGCTCAT TTGAAAGAGC TCATTCAGAC CCGCATGTTC
GATGAGCGCA GTGGCTTTTT CTATGACTTG AGGTTTGATG ATTCAGGTTC GCATAAAATG
ATAGATGCCG GAAAGGGAGT CGAGGGCTGG CTCCCCCTAT GGGCCGGCGC GGCTTCGGCC
TTGCAGGCAA AACAGATGGT AGAAACACAT CTGACCGAGC AGGCATTCGC AACAAAAATC
CCATTCCCTA CGGTCAGTGC CGATAGCCCG AACTTCGCTG CGACTCAGTA TTGGCGTGGA
CCGGTGTGGC TGGATCAGGC CCTGTTTGGG TTAATGGGGC TTAAAAGATA TGGTTATGAC
ACGGAAGCCA CACGTCTTGC AACACGTCTG GTTGAGCAGG GTGAGGGGAT CCTTCAACAG
GCGCCTATCA GGGAGAATTA CGATCCGCTA ACCGGCAGGG GGCTGCACTG CACTAACTTC
AGTTGGTCGG CATCTGTGCT GCTCTTGATA TATGATTCAT GGCTGAGTCG GCCGTGA
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| Protein sequence | MLSCLLLCIS SLTAQTSADY HDLLPYQGTP TSMEERDGKG NLVIPATYVD QGAWHGFHLP
DTPEYFGSFT GPLFIAQEYS LHLSDSLQRL SLKNMDSGKI LDFAQATESR LFSRPDALVQ
QFRWPELSLE MSLSYSDNRT SVIRTRLINN TMSPQHWQLS WSGVPFSSHP KLPEHRVIKR
LDSWKTGIRW RLNSVMETWQ MQLADAEYEI WFDREMRIEL SQEQGYQAST SIISLAGGEH
KEFLSAQRYF HTKAERISHG IPEWNEIGRA LDTNRGRWQR RIDRAISGGD LAYRKMAVKS
MLTLMHNWRS PAGALLHDAV TPSVTYKWFN GVWAWDSWKQ AVALSHFDTD LAKSNVLAMF
DYQFTVEDRV RPQDAGSLPD AIFYNKDPAR GGEGGNWNER NGKPPLATWA VWEIYQQSGD
LEFVELMYPK LVAYHQWWYR NRDHNGNGLA EYGANLHPAH FKDGKPLRGA IIEAAAWESG
MDNAPRFDDD ASVQVLKNLD ENGKLIGFSL SQESVDLNAY LFAEKELLAR MAKLQGLDRE
SSRWAGEAAH LKELIQTRMF DERSGFFYDL RFDDSGSHKM IDAGKGVEGW LPLWAGAASA
LQAKQMVETH LTEQAFATKI PFPTVSADSP NFAATQYWRG PVWLDQALFG LMGLKRYGYD
TEATRLATRL VEQGEGILQQ APIRENYDPL TGRGLHCTNF SWSASVLLLI YDSWLSRP
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