| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4419 |
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| Symbol | |
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| ID | 5610521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5401581 |
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| End bp | 5402588 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935389 |
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| Product | formate dehydrogenase, gamma subunit |
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| Protein accession | YP_001476149 |
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| Protein GI | 157377549 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
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| TIGRFAM ID | [TIGR01583] formate dehydrogenase, gamma subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTATTAA AATCACTGCG TGGCCTGTTT GCTTTGCTGG TTTTACCTTT TGTTTTAACT
ATGGGGTTAG GTTTGAGCAC ATCGGCGCTT GCCGTCGACG ATCAAACCAG CCAACAGATG
GCCAATAGCA GCGAGGTCGA TCTATGGCAT GCTGTTAAGA CTGGCGATTC TGGTTATACC
ACCAAGAAGG GCGTTGAAAG TGGCGTTCTG ATAAACGTAT CGGCTATTGA GGCAACTGAG
ATAAAGAATC AATACCTCAC TCCAGCGATG GGTTTGGCGG TATTGGGTGT ATTTGGTGCT
TTCATCGTCT TCTATTTTGT TAATGGTCCC TCTAAGTTAA GTAAGGGCTA CTCTGGCAAG
ATGGTATTAC GTTGGTCAAA GGCAGACTTG TGGATTCACT GGGTATTAGC TATCTCTTGT
CTGGGGCTGA TACTTACAGG TATCAACATC ATGCTGGGTA AACATATTCT AGAGCCTTAT
GTGGGTGAAG GAATGTGGGC CGGACTGATT TATGCCAGTA AGTTTATCCA TGATTACGTG
GGTCCTGTGT TTATCATATC TTGGATCTTG TGCGTCGTTA AATGGATGCC TCTGCAGACA
TTTAAGATGT ATGACCTGAA ATGGTTCTTA GTCGTTGGTG GTTACATCAA CTTCGGCCCA
TTCAAGGGTA AGCATCCGGA TAGTGGTTTT GCTAATGCCG GTGAGAAAAT GTGGTTCTGG
ACACTTACCC TGTTCGGACT GTTCATCAGT GTTTCAGGCA TGATGTTAGT CTTGCCTGGC
TTAGATCTTC CTCGTGAAGC GTCTTTTGCG GCACTGCTGA TACACGCTAT CAGCGCGATC
ATTATCATCG CATTTACTAT CGTACATATT TGGATGGCGA CAGTATTGAG TGAAGGTGGT
ATGGAGTGTA TGAAGTCTGG TTATTGTGAT GAGAACTGGG CCGTACAACA CCACAACCTT
TGGTATGATG AGATCAAGGC TAACGGTACG TTGGAATACA AAGATTAA
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| Protein sequence | MLLKSLRGLF ALLVLPFVLT MGLGLSTSAL AVDDQTSQQM ANSSEVDLWH AVKTGDSGYT
TKKGVESGVL INVSAIEATE IKNQYLTPAM GLAVLGVFGA FIVFYFVNGP SKLSKGYSGK
MVLRWSKADL WIHWVLAISC LGLILTGINI MLGKHILEPY VGEGMWAGLI YASKFIHDYV
GPVFIISWIL CVVKWMPLQT FKMYDLKWFL VVGGYINFGP FKGKHPDSGF ANAGEKMWFW
TLTLFGLFIS VSGMMLVLPG LDLPREASFA ALLIHAISAI IIIAFTIVHI WMATVLSEGG
MECMKSGYCD ENWAVQHHNL WYDEIKANGT LEYKD
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