Gene Ssed_4415 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4415 
Symbol 
ID5613024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5396098 
End bp5397084 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content47% 
IMG OID640935385 
Productformate dehydrogenase, C subunit, putative 
Protein accessionYP_001476145 
Protein GI157377545 
COG category[C] Energy production and conversion 
COG ID[COG2864] Cytochrome b subunit of formate dehydrogenase 
TIGRFAM ID[TIGR01583] formate dehydrogenase, gamma subunit 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAATT GGTTCAAACA GATTGGCTTA ACTTTAGTGC TGATGTTTAG TGCTATTGGC 
CTAGCTCAAG CTGGCTCTTC ACAAGGAGCT GAGCAGCCTG TCGCAACGGA TGGCCAAATT
TGGTCTCAGT TAAAAGCGGG TGCCACAGGT GTAACTACCT CTCATGGTGA GTTCCACAAT
CAGCCGATCA ATACCTATGA TCTACGTGTT TTAGAACTTC GTAGTGATCT GTTAGCGCCA
GCATTAACGG CTGCGCTATT TGGTATGATC ATCATCTTCG TCCTGTTTAT CAAAGTGAAT
GGTATTTCTA AACTTCACGG TGGTTTCTCA GGCAAGCTGG TTTATCGCTG GTCTAAGTTT
GATGTATCGA TTCACTGGTT AGGTGCTATT CCTTGCCTGT TATTGATTCT GACGGGTCTC
ACTCTGTTGG CCGGACGTTT CTTCTTCCAG CCTTACATTA GTGAAGGCTT GTGGGCTGGA
TTTGTCTACG GCGCTAAGCA AGTGCATGAC TTCATGGCTA TCCCATTCAT GCTGGGTTGG
GCCTTGATGA CCACGCTTTG GGCTAAAAAC CAGTTGCCTA AGATGTATGA CCTTAAGTGG
ATGATGGTGG TGGGTGGTTA CATCAACTTC GGTCCATTCA AAGGTAAGCA TCCGGATGCC
GGTTTTGCTA ACGCAGGAGA AAAACTCTGG TTCTGGGCCT TTGCTGTCTT TGGCCTGGTT
ATCTCAGCGT CTGGCATGTT GCTGCTATTC CCGAACTTGT TCGAGCCTAG CCGCACATTG
AGCCTGATTG CACTCGTGCT TCACTCTGTC AGTGCCATCA TCATTACTGC TTTCTCAATC
GTCCATATCT TTATGGCAAC GGTTATGTCT GAAGGTGGTA TGGAGTGTAT GGTTTCTGGA
TACTGTGATG AGACTTGGGC AAGCCAACAC CACAATCTTT GGTTCGATGA GATCAAAGAG
AACGGTTCGC TTAAGTATAA AGAGTAG
 
Protein sequence
MNNWFKQIGL TLVLMFSAIG LAQAGSSQGA EQPVATDGQI WSQLKAGATG VTTSHGEFHN 
QPINTYDLRV LELRSDLLAP ALTAALFGMI IIFVLFIKVN GISKLHGGFS GKLVYRWSKF
DVSIHWLGAI PCLLLILTGL TLLAGRFFFQ PYISEGLWAG FVYGAKQVHD FMAIPFMLGW
ALMTTLWAKN QLPKMYDLKW MMVVGGYINF GPFKGKHPDA GFANAGEKLW FWAFAVFGLV
ISASGMLLLF PNLFEPSRTL SLIALVLHSV SAIIITAFSI VHIFMATVMS EGGMECMVSG
YCDETWASQH HNLWFDEIKE NGSLKYKE