| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4415 |
|---|
| Symbol | |
|---|
| ID | 5613024 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5396098 |
|---|
| End bp | 5397084 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640935385 |
|---|
| Product | formate dehydrogenase, C subunit, putative |
|---|
| Protein accession | YP_001476145 |
|---|
| Protein GI | 157377545 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01583] formate dehydrogenase, gamma subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAATT GGTTCAAACA GATTGGCTTA ACTTTAGTGC TGATGTTTAG TGCTATTGGC
CTAGCTCAAG CTGGCTCTTC ACAAGGAGCT GAGCAGCCTG TCGCAACGGA TGGCCAAATT
TGGTCTCAGT TAAAAGCGGG TGCCACAGGT GTAACTACCT CTCATGGTGA GTTCCACAAT
CAGCCGATCA ATACCTATGA TCTACGTGTT TTAGAACTTC GTAGTGATCT GTTAGCGCCA
GCATTAACGG CTGCGCTATT TGGTATGATC ATCATCTTCG TCCTGTTTAT CAAAGTGAAT
GGTATTTCTA AACTTCACGG TGGTTTCTCA GGCAAGCTGG TTTATCGCTG GTCTAAGTTT
GATGTATCGA TTCACTGGTT AGGTGCTATT CCTTGCCTGT TATTGATTCT GACGGGTCTC
ACTCTGTTGG CCGGACGTTT CTTCTTCCAG CCTTACATTA GTGAAGGCTT GTGGGCTGGA
TTTGTCTACG GCGCTAAGCA AGTGCATGAC TTCATGGCTA TCCCATTCAT GCTGGGTTGG
GCCTTGATGA CCACGCTTTG GGCTAAAAAC CAGTTGCCTA AGATGTATGA CCTTAAGTGG
ATGATGGTGG TGGGTGGTTA CATCAACTTC GGTCCATTCA AAGGTAAGCA TCCGGATGCC
GGTTTTGCTA ACGCAGGAGA AAAACTCTGG TTCTGGGCCT TTGCTGTCTT TGGCCTGGTT
ATCTCAGCGT CTGGCATGTT GCTGCTATTC CCGAACTTGT TCGAGCCTAG CCGCACATTG
AGCCTGATTG CACTCGTGCT TCACTCTGTC AGTGCCATCA TCATTACTGC TTTCTCAATC
GTCCATATCT TTATGGCAAC GGTTATGTCT GAAGGTGGTA TGGAGTGTAT GGTTTCTGGA
TACTGTGATG AGACTTGGGC AAGCCAACAC CACAATCTTT GGTTCGATGA GATCAAAGAG
AACGGTTCGC TTAAGTATAA AGAGTAG
|
|---|
| Protein sequence | MNNWFKQIGL TLVLMFSAIG LAQAGSSQGA EQPVATDGQI WSQLKAGATG VTTSHGEFHN
QPINTYDLRV LELRSDLLAP ALTAALFGMI IIFVLFIKVN GISKLHGGFS GKLVYRWSKF
DVSIHWLGAI PCLLLILTGL TLLAGRFFFQ PYISEGLWAG FVYGAKQVHD FMAIPFMLGW
ALMTTLWAKN QLPKMYDLKW MMVVGGYINF GPFKGKHPDA GFANAGEKLW FWAFAVFGLV
ISASGMLLLF PNLFEPSRTL SLIALVLHSV SAIIITAFSI VHIFMATVMS EGGMECMVSG
YCDETWASQH HNLWFDEIKE NGSLKYKE
|
|---|
| |