Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4415 |
Symbol | |
ID | 5613024 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5396098 |
End bp | 5397084 |
Gene Length | 987 bp |
Protein Length | 328 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640935385 |
Product | formate dehydrogenase, C subunit, putative |
Protein accession | YP_001476145 |
Protein GI | 157377545 |
COG category | [C] Energy production and conversion |
COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
TIGRFAM ID | [TIGR01583] formate dehydrogenase, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAATT GGTTCAAACA GATTGGCTTA ACTTTAGTGC TGATGTTTAG TGCTATTGGC CTAGCTCAAG CTGGCTCTTC ACAAGGAGCT GAGCAGCCTG TCGCAACGGA TGGCCAAATT TGGTCTCAGT TAAAAGCGGG TGCCACAGGT GTAACTACCT CTCATGGTGA GTTCCACAAT CAGCCGATCA ATACCTATGA TCTACGTGTT TTAGAACTTC GTAGTGATCT GTTAGCGCCA GCATTAACGG CTGCGCTATT TGGTATGATC ATCATCTTCG TCCTGTTTAT CAAAGTGAAT GGTATTTCTA AACTTCACGG TGGTTTCTCA GGCAAGCTGG TTTATCGCTG GTCTAAGTTT GATGTATCGA TTCACTGGTT AGGTGCTATT CCTTGCCTGT TATTGATTCT GACGGGTCTC ACTCTGTTGG CCGGACGTTT CTTCTTCCAG CCTTACATTA GTGAAGGCTT GTGGGCTGGA TTTGTCTACG GCGCTAAGCA AGTGCATGAC TTCATGGCTA TCCCATTCAT GCTGGGTTGG GCCTTGATGA CCACGCTTTG GGCTAAAAAC CAGTTGCCTA AGATGTATGA CCTTAAGTGG ATGATGGTGG TGGGTGGTTA CATCAACTTC GGTCCATTCA AAGGTAAGCA TCCGGATGCC GGTTTTGCTA ACGCAGGAGA AAAACTCTGG TTCTGGGCCT TTGCTGTCTT TGGCCTGGTT ATCTCAGCGT CTGGCATGTT GCTGCTATTC CCGAACTTGT TCGAGCCTAG CCGCACATTG AGCCTGATTG CACTCGTGCT TCACTCTGTC AGTGCCATCA TCATTACTGC TTTCTCAATC GTCCATATCT TTATGGCAAC GGTTATGTCT GAAGGTGGTA TGGAGTGTAT GGTTTCTGGA TACTGTGATG AGACTTGGGC AAGCCAACAC CACAATCTTT GGTTCGATGA GATCAAAGAG AACGGTTCGC TTAAGTATAA AGAGTAG
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Protein sequence | MNNWFKQIGL TLVLMFSAIG LAQAGSSQGA EQPVATDGQI WSQLKAGATG VTTSHGEFHN QPINTYDLRV LELRSDLLAP ALTAALFGMI IIFVLFIKVN GISKLHGGFS GKLVYRWSKF DVSIHWLGAI PCLLLILTGL TLLAGRFFFQ PYISEGLWAG FVYGAKQVHD FMAIPFMLGW ALMTTLWAKN QLPKMYDLKW MMVVGGYINF GPFKGKHPDA GFANAGEKLW FWAFAVFGLV ISASGMLLLF PNLFEPSRTL SLIALVLHSV SAIIITAFSI VHIFMATVMS EGGMECMVSG YCDETWASQH HNLWFDEIKE NGSLKYKE
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