| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4395 |
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| Symbol | |
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| ID | 5609998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5375873 |
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| End bp | 5376982 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640935365 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001476125 |
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| Protein GI | 157377525 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00684412 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0000262843 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCTCAAG ACGTCGGTGA TCTTTATTGT CGTATCAGAC AAGATAAGCA GATCAGGCTC
GATGCCGAAT TTACCTGTAA GGCCGGCGAG GTCATGGCGG TTGTTGGCCC TTCCGGTGGC
GGTAAATCGA CCCTGCTTCG AATGATTGCC GGCTTAAATC AACCTGAGTC GGGTGAGATC
CGCTACGGAG ATATCTCCTG GTTTAAAGGT GATGCCAAGG TTAACCTGAC CCCTCAACAG
CGTCATCTGG GTTATGTGCC TCAACATTTT GGTCTGTTTC CTAATTTAAC CGCGCTCGAG
AATGTGGTTG CCGCACTGGA TCATATTCCT AAGTCTGAGC GGATCCCCCG TGCTAAAGAG
TGGCTGGAGA GGGTGAACCT TCATGGCTTA CCCGATCGTT TACCTGCCAA CCTGTCCGGC
GGACAGAGGC AGAGAGTGGC ATTGGCCAGA GCGCTTGCTC GGGAGCCGTC GGTTCTCTTG
TTGGATGAGC CATTTTCTGC CGTGGACAGA GAGACCCGTG AGCGTCTCTA TCTCGAGCTG
GCCAGATTGA AAGAACAACT CTCTATTCCC GTTGTCATGG TGACTCACGA TCTTAATGAG
GCGTTACTGC TTGCCGATAA TATGATTTTG ATAAGTCAGG GGAAGATGTT GCAGCAGGGG
ATACCTCAGG AGGTATTGAC TCGTCCTCGT AATGAAGCGG TTGCCAAGCA GATGGGGTTG
CGTAATCTCT TCGATGCTCA TGTGATTGCT CAGGAAGAGG AGCGCCAGAT CACCTGGTTG
AAGTTTGGCG AACACCTGAT CGCCAGCACC TACTTCGACA GCTTAGCCGT CGGGACTAAG
GTGCGTTGGG TGATCCCAAA TCACGGCATA CGATTTAACT CGATTAAACA GGGCAGGCTA
TGTCGAAGTT TCAACAAGTT AGATATCACC ATAGACTCGA TGTTGACTAT GGGAGAAACC
GTCAGAATCG TCGCAAGCGT TAAGGGAGTG CGCCATCAGA TTAATGCCGA GGTGCCGCTG
CATCTGGCAT TAAAGCTTGA GTTGGCAGAG GGGGTTAATA CAACCGTTGC CTTAAAATCT
GAGCTTATTC ATATTCTGGA GCCGCAATAG
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| Protein sequence | MSQDVGDLYC RIRQDKQIRL DAEFTCKAGE VMAVVGPSGG GKSTLLRMIA GLNQPESGEI
RYGDISWFKG DAKVNLTPQQ RHLGYVPQHF GLFPNLTALE NVVAALDHIP KSERIPRAKE
WLERVNLHGL PDRLPANLSG GQRQRVALAR ALAREPSVLL LDEPFSAVDR ETRERLYLEL
ARLKEQLSIP VVMVTHDLNE ALLLADNMIL ISQGKMLQQG IPQEVLTRPR NEAVAKQMGL
RNLFDAHVIA QEEERQITWL KFGEHLIAST YFDSLAVGTK VRWVIPNHGI RFNSIKQGRL
CRSFNKLDIT IDSMLTMGET VRIVASVKGV RHQINAEVPL HLALKLELAE GVNTTVALKS
ELIHILEPQ
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