| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4376 |
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| Symbol | |
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| ID | 5610633 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5360483 |
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| End bp | 5361595 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935346 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001476106 |
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| Protein GI | 157377506 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.349604 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTGC TTACTTTTAT CCCAACGATT GTCACATTAT CACTGACTCT GTCACTGCTC
TCCCCCCACG CAGTCATCGC TGCCGAAGGT GATAAAAAGG AGGAAACGCC CCCCAGCTTA
GTCAGTGTCG TTTCGGTAGA GAATCGGGCG CTATCACCTA AAATTATGGT GATAGGTTCG
GTGCACTCCC GTAGTAGCTC AGAGTTAACA GCAGGCATAG AGGGTAAACT GGAGTGGGTT
CAGGAGGCGG GGACCCGAGT CAAGGCGGGA GAGGTGGTCG CGACACTGGA AAAGACTCGA
CTATCACTAC TAAAAGAGCA ACAGGAAGCC CAGATAGAGT ATGAGCAGGT CGGCCTGACT
CGGCTTGAGC GCGAATACCG ACGCCTGCAA AAATTGATCG CCAGCAAAAG CGCTTCCGAA
ACTGAATTGG ACAAGTCACG TTCAGACAGA GATTTGGCAG CAGCTAACCT TAAACTGGCA
CAGATAAAGC TGAAGATGAT CATGGATGAT CTTAGCCGCA CCGAAGTTAA AGCCCCCTTC
TCGGGGATCA TCACCGAACG CAAACATCAG GCAGGAGAAG ATATTAGCCG CTCGATTGCA
ATCATTGCGA TGACAGATCC CGACAACTTA GAGATACGTC TACATGCTCC TCTGAAGCAC
AGTCGACGGG TAAAGGTGGG AGATGAGCTC CATATCTATC ATACAGAAGG CGAGTTTCAC
GCCAATATAC GCAGCCTGAT CCCGGTATCG GATATTCGCT CACAAACCTT CGAGGCTCGC
ATCGATCTCC CAATTGAAAT GCAAGATGCA TTCAGTGTTG GCGAGCTCGT CTCTCTGGCT
CTGCCTATCG CACCTAAACA GCTCACCACC TTAGTGCCAA GGGATGCTAT CGTACTTCGT
TCGGCGGGAG CCTATTTGTT TAAGATAGAC ACTGACAATA AGGCGGTGAA GATCCCGGTC
GAACTCGGCG ATGGTGAGGG GGACTGGATT GCCGTCAATG GCGACCTGAC CGAGAGTGAC
ACCGTCGTTA TTCGTGGTGC CGAAACCTTA CTCGATGGCC AGCAAGTTAA GCTTCAGCCC
CTCCCGGGAT CGGCGGTCTC GACCGCAGGC TAA
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| Protein sequence | MKLLTFIPTI VTLSLTLSLL SPHAVIAAEG DKKEETPPSL VSVVSVENRA LSPKIMVIGS
VHSRSSSELT AGIEGKLEWV QEAGTRVKAG EVVATLEKTR LSLLKEQQEA QIEYEQVGLT
RLEREYRRLQ KLIASKSASE TELDKSRSDR DLAAANLKLA QIKLKMIMDD LSRTEVKAPF
SGIITERKHQ AGEDISRSIA IIAMTDPDNL EIRLHAPLKH SRRVKVGDEL HIYHTEGEFH
ANIRSLIPVS DIRSQTFEAR IDLPIEMQDA FSVGELVSLA LPIAPKQLTT LVPRDAIVLR
SAGAYLFKID TDNKAVKIPV ELGDGEGDWI AVNGDLTESD TVVIRGAETL LDGQQVKLQP
LPGSAVSTAG
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