| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4371 |
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| Symbol | |
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| ID | 5610730 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5349371 |
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| End bp | 5351560 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935341 |
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| Product | oligopeptidase B |
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| Protein accession | YP_001476101 |
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| Protein GI | 157377501 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1770] Protease II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCTATGA TTCCTAAGTT CGTTTTGAGT TTATTACTAT TAACCCTATT CGTTGGATGT
ACGTCTATGA AGCCTGTTAA CCCGGTTCAG CCCCCGATCG CTGAAAAAAT TCCTAATGAG
ATGAAGTTGC ATGGCATCGA GCGCATCGAC GATTACTATT GGTTAAGAGA TGACGCTCGT
AAAAATCCCA AAGTGTTGGC GCACTTAGAG GCTGAAAATC GATATACAAA AGCACAGTTT
TCTCCATTTG AAGGTTTTCA ACAGACACTG TTCGATGAGC TCATCGGCCG TTTAGATAAA
GATGAGTCGA GTGTGCCCTA TCTATGGCAT TCACATTGGT ATTCACGCCG ATATAAGCAA
GGTTTTGAAT ACCCTCTGGT GATAAGGCAA GGTGAGCCCG ATGGCGATGA AACTCTGTTA
CTCGATGTGA ATCTGCGCGC AGAAGGTCAT GAATTCTATG GCCTGGGCGG TGTGTCCGTG
AGTCCCGATG AATCGATAAT CGCCTTCGGA GAAGATACCT TAAGTCGCCG TATCTATAGG
GTCTATTTTA AAGACATTGC CAGCGGGAAG TTGTTAGAGG ATGAACTCAC GGGAACCGAT
GGCCGGGTTG TTTGGGCTAA TGATAATAAG CACCTGTTCT ATATAGCCAA AGATCCTAAG
ACCTTGTTGG GGTTTCAGGT ATTTCGTCAT CAACTAGGGA CATCACAATC ACAGGACGTT
CTGGTTTTCG AGGAGAAGGA TGATAGCTTT TATATCTCGT TGGGTAAGTC TCTCGATGAG
TCCAGAATAA CGCTCTTCAA TGAGAGTACG ACAACGAGTG AGGTGTCAGT TCTCGATGCC
GATATGCCAT TAGGTGAGTT TAAGCCATTG TTGGCACGAG AGGAGGGGCA TGAATACTCT
GTCGCTAAGC TTGGTAGCAG TTACTACATT CTCACCAACT GGAAGGCGAT TAACTTTCGC
TTGATGAAGG TCGACGAAAC AAAGTTTAGT GATAAGGCTA TGTGGCAGGA GGTCATTGGC
GCCAGAGCGG ATAGCCGTAT TGAAGATTAT CTCCTGTTGG AGAAATTCTT AATCGTGCAA
ACCCGTGAGA AAGGGATAAG CCAACTTCGG GTCTTCCGCC TTACTCATGT TAATAATGGT
GATGTTAGCC AAGGCGAGTA CGTTGAGAGT GAGCCTTTTG AGATCCCGTT TAATGATCCT
GCCTATATCG TGGGCCTGGA TGTCAATGCC CGACAAGAGA GTGATAAGTT ACGGATCTAC
TACTCGAGCC CGACGACTCC GGAGTCAATT TATGAGTATG ACCTAACCAG TCTGCCGATA
CGAGTGTTAC TCAAGCAAGA GAAGGTACTT GGAGGGTTCG AGAGCGAAGC CTATAAGGCC
GAGCGCATAT TTATTACGGC CAGAGATGGT GTTCAGGTAC CTGTTACCTT AGTTTATCGA
AAAGATACAT TTAGCAAAGA TGGTAGCAAT CCACTCTATC AATATGGCTA TGGTGCCTAT
GGCCATACGA TAGATCCCGA TTTTGACAGT TCGGCTATAA GCCTTCTGGA CAGGGGCGTG
GTATATGCTA TTGCCCATGT CCGTGGAGGC GAGATGTTGG GCAGGCCCTG GTATGACGAT
GGTCGCATGC TAAATAAGCA ACATAGCTTC GATGACTTTA TTGACGTGAC TAAGGCATTG
ACGTCTCAAG GGTACGGCGA CAGGAAACGT GTTGTCGCGG CAGGTGGCAG TGCGGGTGGC
TTGTTAATGG GAGGCGTTAT AAATCAAGCA CCGGAACTAT ATTTTGCCGT AGCGGCCCAT
GTGCCCTTTG TCGATATTGT GACGACTATG CTGGATGAGT CTATACCGTT AACGACTAAT
GAGTATGATG AATGGGGTAA CCCCAATGAG AAGAGGTATT TCGACTATAT GCTTAGCTAT
TCGCCCTATG ATCAGATAAA GCGACAAGCT TACCCTCACA TGCTCGTTAC TACCGGCCTT
CATGACTCGC AAGTGCAGTA TTTTGAACCC GCTAAATGGG TCGCTAAACT CAGGGATTAT
AAGACTGACG ACAATCAATT GCTCTTCCAT ATTGATATGG AGGCGGGTCA TGGTGGTAAG
AGTGGTCGCT ATAGGAGATA CCAGGATACG GCTCAAGAAT ACGCTTTTTT CCTGGGTCTA
CTGGGACTTA ACGAGATTAA GACTAAATGA
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| Protein sequence | MPMIPKFVLS LLLLTLFVGC TSMKPVNPVQ PPIAEKIPNE MKLHGIERID DYYWLRDDAR
KNPKVLAHLE AENRYTKAQF SPFEGFQQTL FDELIGRLDK DESSVPYLWH SHWYSRRYKQ
GFEYPLVIRQ GEPDGDETLL LDVNLRAEGH EFYGLGGVSV SPDESIIAFG EDTLSRRIYR
VYFKDIASGK LLEDELTGTD GRVVWANDNK HLFYIAKDPK TLLGFQVFRH QLGTSQSQDV
LVFEEKDDSF YISLGKSLDE SRITLFNEST TTSEVSVLDA DMPLGEFKPL LAREEGHEYS
VAKLGSSYYI LTNWKAINFR LMKVDETKFS DKAMWQEVIG ARADSRIEDY LLLEKFLIVQ
TREKGISQLR VFRLTHVNNG DVSQGEYVES EPFEIPFNDP AYIVGLDVNA RQESDKLRIY
YSSPTTPESI YEYDLTSLPI RVLLKQEKVL GGFESEAYKA ERIFITARDG VQVPVTLVYR
KDTFSKDGSN PLYQYGYGAY GHTIDPDFDS SAISLLDRGV VYAIAHVRGG EMLGRPWYDD
GRMLNKQHSF DDFIDVTKAL TSQGYGDRKR VVAAGGSAGG LLMGGVINQA PELYFAVAAH
VPFVDIVTTM LDESIPLTTN EYDEWGNPNE KRYFDYMLSY SPYDQIKRQA YPHMLVTTGL
HDSQVQYFEP AKWVAKLRDY KTDDNQLLFH IDMEAGHGGK SGRYRRYQDT AQEYAFFLGL
LGLNEIKTK
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