| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4347 |
|---|
| Symbol | |
|---|
| ID | 5613142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5324260 |
|---|
| End bp | 5324925 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640935317 |
|---|
| Product | HAD family hydrolase |
|---|
| Protein accession | YP_001476077 |
|---|
| Protein GI | 157377477 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.743736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.358597 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTCCAT GGAATAAGAT AGATACAGTA TTACTCGATA TGGACGGCAC ACTGCTGGAC
CTTCATTTCG ATAATCACTT TTGGTTAAGT CTGGTCCCTA AAGAGCTAAG CCGCCAGAAA
GGGCTCGATA GCCAAGCCGC TCAGCACCTG GTTGAAACCG CATACCAGAA AGTATTCGGT
ACTTTAGATT GGTATTGTCT GGACTATTGG CAACGGGAGT TACAGATAGA CATCAAGGAG
TTACATAAAA CCTTGGTCAA TAGGATCCAG CTCAGACAAG ACAGCATGCC TTTCTTAACG
GCCTTAGGTG TACAAGGTAA GTCACGCATT TTGGTGACCA ATGCTCACCC ACACAGCCTT
TCACTAAAGC TGGAACATAC CGATCTGAGC AAGGGCTTAG ATAAGATGAT ATCAAGCCAT
GAGACAGGTT ACCCCAAGGA GCACCCAAAG TTTTGGCTGC ATCTGTTTCA ACAGTTCAAC
TTAGACCCAA GCCGCTGCCT GTTTGTGGAT GACAGCGAAG CCATTCTAAA AGCAGCGAAA
GAGGCCGGGG TGGGATATCA GCTTGGCATC ACCAACCCTG ATAGCCAAAA ACCAGATAAA
GTTTTTAGCG ATTTCCCATC GATTGGGGAT TATCACCTGC TATTGGATGA CCTTTTAGCC
GATTGA
|
|---|
| Protein sequence | MFPWNKIDTV LLDMDGTLLD LHFDNHFWLS LVPKELSRQK GLDSQAAQHL VETAYQKVFG
TLDWYCLDYW QRELQIDIKE LHKTLVNRIQ LRQDSMPFLT ALGVQGKSRI LVTNAHPHSL
SLKLEHTDLS KGLDKMISSH ETGYPKEHPK FWLHLFQQFN LDPSRCLFVD DSEAILKAAK
EAGVGYQLGI TNPDSQKPDK VFSDFPSIGD YHLLLDDLLA D
|
|---|
| |