| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4280 |
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| Symbol | |
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| ID | 5612017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5253716 |
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| End bp | 5254990 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935240 |
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| Product | competence/damage-inducible protein CinA |
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| Protein accession | YP_001476012 |
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| Protein GI | 157377412 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1058] Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA
[COG1546] Uncharacterized protein (competence- and mitomycin-induced) |
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| TIGRFAM ID | [TIGR00177] molybdenum cofactor synthesis domain
[TIGR00199] competence/damage-inducible protein CinA C-terminal domain
[TIGR00200] competence/damage-inducible protein CinA N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.27905 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTCG AGATGATTTG TACTGGTGAA GAGGTGTTAG CGGGTCAGAT TGTTGATACT
AATGCAGCCT GGTTTGCCAA TACCTTGATG GGGAAGGGCA TTGAGTGTCA ACGACGAATT
ACGGTTGGAG ATCGTCTGGA AGATCTTGTC GCAGTCTTCA AAGAGCGTAG CACTGAGGCC
GATATCATTA TGGTCAATGG GGGCTTAGGT CCTACGAGCG ATGATCTCTC TACAGAGGCA
ATGGCATTGG CTATGGGAGT TCCACTCGTT GAGAGCAAAG AGTGGCGTAC TAAGCTGGAA
GCTTGGTTTA CCAGAAATAA CCGTGTTATG GCTGCAAGCA ATCTTAAGCA AGCGTTACTA
CCCGAGGGGG CTGTAATGAT TGATAATCCA GTCGGTACCG CATGCGGCTT TGCCGTCAAA
CTTAATCGTG CATGGCTGTT TTTTACACCT GGTGTTCCTT TTGAATTCAA ACGAATGGTA
AAGGAGCAGT TTATTCCTTT CGTAGAGAAA CAGTTTGCGC TGTCTGAGTC TGTTTCAGTT
AAGAAGCTAC TTACCCTTGG CAGAGGTGAG TCGTCATTGG CCGATGAGTT GGATGTAATT
CAACTCCCAG AAGGCGTCAC TCTAGGCTAT CGTTCTTATA TGCCCTATAT TGAGATAAAG
CTGTTTGCAC GGGGTCAGTC AGCCATAGAT TCGTTACCTG ATATTGAAGC TCAAGTTAAA
AAGGTACTCG GAAATGGGAT CGTTGCCGAA AACATCACTA CGTTAGATCA AGAGATCCAT
GAGCGACTCA TTAATTCAGG CCTAAGTTTG AGCGTCGCCG AGTCTTGCAC CGGCGGTATG
ATAACGAGTG GTTTAGTCGC GTTTGCGGGA AGTTCATCTT ACCTTCACCA AGGCTTAGTC
ACTTATAGCA ATGAAGCTAA GGTCAAGGTG CTTGGTGTTA ACTCTCAGAC TCTGGATGAT
TATGGCGCTG TATCGATAGC TACAGTTGAA GAGATGGCAA AAGGTGCCCG TGGTATTCTC
GGGAGTGATT ACGCTCTCGC CACAAGCGGC ATTGCAGGTC CTGAAGGTGG AACAGATGAG
AAGCCTGTTG GTACCGTTGC CATCGCACTC GCAACAAAGT CGGGTATTTA CAGTCAGATG
GTTAAGTTGC CTGGACGATC ACGTGCCTTG GTGAGAGCAT TAAGTACTGC AGTTGCTTAT
GACATGCTTC GAAGGGAGTT GTTGGGTGAG GCTGTGATTG TTGATTACTC CTCTTTCTCT
CGTTTCTGCA AGTAA
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| Protein sequence | MKLEMICTGE EVLAGQIVDT NAAWFANTLM GKGIECQRRI TVGDRLEDLV AVFKERSTEA
DIIMVNGGLG PTSDDLSTEA MALAMGVPLV ESKEWRTKLE AWFTRNNRVM AASNLKQALL
PEGAVMIDNP VGTACGFAVK LNRAWLFFTP GVPFEFKRMV KEQFIPFVEK QFALSESVSV
KKLLTLGRGE SSLADELDVI QLPEGVTLGY RSYMPYIEIK LFARGQSAID SLPDIEAQVK
KVLGNGIVAE NITTLDQEIH ERLINSGLSL SVAESCTGGM ITSGLVAFAG SSSYLHQGLV
TYSNEAKVKV LGVNSQTLDD YGAVSIATVE EMAKGARGIL GSDYALATSG IAGPEGGTDE
KPVGTVAIAL ATKSGIYSQM VKLPGRSRAL VRALSTAVAY DMLRRELLGE AVIVDYSSFS
RFCK
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