| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4254 |
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| Symbol | |
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| ID | 5609643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5225593 |
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| End bp | 5226162 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935214 |
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| Product | transport-associated |
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| Protein accession | YP_001475986 |
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| Protein GI | 157377386 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2823] Predicted periplasmic or secreted lipoprotein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.000113499 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCAGAC TGCTCTCACT TGCAGCGATA GCGCTACTTC TTCAGGGCTG TGCCGGTGCC
GTAATGGTTG GGGCGGTGGG TGGCGCTATG ATGGTAAATG ATGAGCGCAG TTTTTCGACT
CAGCTTGATG ATACCAACGC AGACTTCCAG ATTGCCAGCG AACTCGCCGC CTTGGAAGAT
GTAAAAAACC AAGCCAATAT AACCGGCGTG GTCATGAATG GTAATGTGCT GCTGATAGGC
CAGTCTCCCA ATTCAATGCT GAGAGACAAG GCTATTCATG CAGTTCAAAA ACTGAAACTA
GGCGGAAAGA TCCATAACCA GATCCGGATA GGCAATCCGA CCTCCTTCAC CACCAGAAGC
AATGACACCT GGATAACGAC CAAGGTTAAG ACCCGCATGC TCAATACCGA TGACTTAGAT
GTCACCCGTA TTAAAGTCAT CACAGAGAAC GGTGAAGTGT TCCTGCTTGG AGTCGTAGCC
AGAGATCAAG TTGACCTTGC TGTCGATGTC GCCCGAAATA CTGCCGGCGT AAGAAAAGTT
ATCAAGGTAT TCGAATCTCC CGGATCCTGA
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| Protein sequence | MIRLLSLAAI ALLLQGCAGA VMVGAVGGAM MVNDERSFST QLDDTNADFQ IASELAALED
VKNQANITGV VMNGNVLLIG QSPNSMLRDK AIHAVQKLKL GGKIHNQIRI GNPTSFTTRS
NDTWITTKVK TRMLNTDDLD VTRIKVITEN GEVFLLGVVA RDQVDLAVDV ARNTAGVRKV
IKVFESPGS
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