| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4249 |
|---|
| Symbol | |
|---|
| ID | 5613606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 5219352 |
|---|
| End bp | 5221115 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640935208 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_001475981 |
|---|
| Protein GI | 157377381 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.184605 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.00000000381529 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAAATCAG TTCATGGATT CGAGCATCTG TATCTGCGCA ATCACACCTA CTACTTCCGC
TTTGTCTTAC GCAGACATCG AATCAAGTAT CAAATCACCT TAAGTTTGCA TTGCAAGGAC
TTCAACCAAG CCGTTGTTTC GTGGAGAAAA CTCTGTATAG AAGTCTCCAG GCTGAAAAAG
CTTGTGCTGG CATTTCAAAA GCACGAAACT GAGGCAATTA GCCGTCTGGT AAATGGATTT
AAAATCAACA TGCAAGAACA GCTCAAGATG CACCACATCA ACTCACTTGT TGCCGAGCTA
GAGCAGTCCT ACAACGATAA TGCGCATATG CTGAAAGTAC TCGGTAGTAA TTGCCCCATG
GACTTCCCTG ATAGCTTTCA TCACGCTCTG GCTTCATTAT CTGAGGGGGA TAGTAGTATT
TCATCGGATC AAAAGCTGGT GGAACTGGTA GACAGCCTAT CTAACATAGA AAAGTCCGCT
TTCATGCAGT ATTTGGCAAG TGTGCTCATT CGTTTTACTG AGGCAGATCA AGAGATTAAT
GAGCGAGGAT TATTATTAAC AGCAAAAACT GCCTTAGCCA ATAACAATGT TACTGCTGAT
GAGAATTCTC TGGAGTTTAA AGTGCTTCTG AGTAAGCTCA AGTCTTCATC TCAGATTCAA
AACTCACTGA TTGAAACCGT TGCAAGTGAG GATGCTGTGC GAGAGCGTGA GCTAAATCAG
TTGGTCCAAA CTGCCAATGG GGTAGTTACC ACTCCAGATG CCAAACCAAC GAGTAATGCA
CCGCTCTTCT CTGAGGTTTA TCCGGAATTT CTACAGCACA AAATTGAAAA AGAGAAGCTG
GATGATAAGA CTCAGAAAGA TTACGCCAGA AAGTATTTGT TGTGGCAAGC CTTAGTCGAA
GACAAGCCTA TCGACCTCTA TACACCTAAA GATATTGGCT GTTTTATCGA CCGTTGTTTT
GAGCTACCTA AGATGAACAT TAGGCCCTAC AGCAGGATGT CATGGCCAGA GCGAATAGAA
GCGGATGTGC CAGATGAAGA TATGATAGCG CCCAAATCAG TGGGTCATTT CTATAAGTGG
CTGCAAGGTG TTTTTGCCTA TGCCAAGAGT GATACCATTG GCTATATCAG TGCTTCCCCT
TGTTCTATCA AACGTGAGTA CAAGTCCAGA ATTCGTGGGG TGTTTGACGA TTCAGAGTTA
CAAGTATTCC TAAAGGCCGC TGACAGCGAG AAGCAGCTTT GGCGCAAGTG GATGGTTTAT
CTTGGCATCT ACACTGGTGC AAGGCGTGGG GAGCTAGTTC AGCTACGCAA AGAGGATGTG
AAATTCGATA CCGCGACTAA ACGCCATTAC CTGCTTATCA CTGATGTACA TGAAAGCCAA
AAGCTCAAGA CAGAGAATGC CAAGCGTAAA ATACCTCTGC ACATGGATCT TATCAATGCA
GGTTTTATTG AATATGTGGA GTCCTGTAAG GAGCGAGTGT TCGAGGGTGT TAATAATCGT
GAGGTGGTGA CAGCATGGTT TGCCAGACAG ATGCGAAACC TTGAAGTGGA CTCGATTAAT
GAGCTAGGCC ATATCCGAAC ATTTCATAGC TTCCGCCATA CATTTATCAC TAAGGTGATG
AACGCAGGTG TGCAAGTAAA CCTAGTGCAG CAGGTCGTAG GTCATGAAAT AAGCTCGTTT
GGCATTACGG GGAACTATAC CCACAAGTCA ACCGAGCTTA AACATGTACT GCCAGTGATG
GATGGGCTGG ATATTGATAG TTAA
|
|---|
| Protein sequence | MKSVHGFEHL YLRNHTYYFR FVLRRHRIKY QITLSLHCKD FNQAVVSWRK LCIEVSRLKK
LVLAFQKHET EAISRLVNGF KINMQEQLKM HHINSLVAEL EQSYNDNAHM LKVLGSNCPM
DFPDSFHHAL ASLSEGDSSI SSDQKLVELV DSLSNIEKSA FMQYLASVLI RFTEADQEIN
ERGLLLTAKT ALANNNVTAD ENSLEFKVLL SKLKSSSQIQ NSLIETVASE DAVRERELNQ
LVQTANGVVT TPDAKPTSNA PLFSEVYPEF LQHKIEKEKL DDKTQKDYAR KYLLWQALVE
DKPIDLYTPK DIGCFIDRCF ELPKMNIRPY SRMSWPERIE ADVPDEDMIA PKSVGHFYKW
LQGVFAYAKS DTIGYISASP CSIKREYKSR IRGVFDDSEL QVFLKAADSE KQLWRKWMVY
LGIYTGARRG ELVQLRKEDV KFDTATKRHY LLITDVHESQ KLKTENAKRK IPLHMDLINA
GFIEYVESCK ERVFEGVNNR EVVTAWFARQ MRNLEVDSIN ELGHIRTFHS FRHTFITKVM
NAGVQVNLVQ QVVGHEISSF GITGNYTHKS TELKHVLPVM DGLDIDS
|
|---|
| |