| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4244 |
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| Symbol | |
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| ID | 5611276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5212728 |
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| End bp | 5214788 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640935203 |
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| Product | AAA ATPase, central region |
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| Protein accession | YP_001475976 |
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| Protein GI | 157377376 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0464] ATPases of the AAA+ class |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000108013 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACTAGAA TCCATCTCGA ACCCCCTTTT CCTTTTGATA ACTTAATAGT GGAAGCATCC
CCCATACGGG GACACCAAGG CTGTGCGACC ATCTATGCCT ATAGTGCCCT TGCCTCTGGC
TACATTGATA ACACCGATCT TGAGGATCTT AATAGCCGTA TGATCAAGGT GGTGTGCGGT
AAAGGTATCA AGCTAGGCAC TGGCAACAAG CTAAACACCT TAAAGCGCCA CCTTAAGAAG
CAAGGGCTTC AAGCCAACAC CAGTAACCTA GACCACAACT GCAAGTTACT TTCCCAAGGA
CTGGAGCTGC CAAATGACGG TTGGAAGGTG GTGAGGTTTA TTGCGGTGAT GAATGTTAAC
CGAGGTCTAT TTGACCTTAT CAATAAGGTA CTTCCAGAGG ACAATTACGC CAACGCCATG
TTCGCCTGCA TGTTTGATAT GCCAGAGACC AAGCTCATTG AAGTATTAAA GGCTCTGGCG
ACCACCGGAC TCTTTGACCA GTTCTTCGAT AGCAGCCTGA TTGACTTCAT GAACCTACCA
CAGGCCATCA CGAGTTTACT GCTAGGAGCC AAGGTCGAGT ACTACATCAA TCTTATCGAA
CCCTTCATAC AATCTAAGCC AAAGTCTGAA CTGAAGTTAC GCCACTTCAG CCACCTTGAA
TGTGACACCT TACAGCAATT TTTAGACATC AGTATCAACC ACTCCATGCA GGGGATTAAC
ATTCTGCTCT ATGGATTACC CGGCACAGGC AAGACCGAAC TAGCCAAGGT GCTGGCCGAT
AAAACTCAAT CACACCTTAT CGCCATTAAG CCTGTTGGAG ATGAAGTGTC TGAAGAACGT
GGGCAGTTCA AGAAGCAAGC CTTCAGTTCT AACCTAAGGT TACAGTACCT AACGCTGGTA
CAACGCTTAG TGTCACCAGA CGAGAAAACC CTGTTGCTAA TAGATGAGTG TGAGGACATC
TTTGAGCAAA GTATCTCTCA CCGTGGTTAT GGTAAAGATA TGCTGCATGA ACTGATGGAA
CAAAACACCA TACCAACCAT CTGGATAACC AACCATATCG ATGTTATCCC CCATAGCTGC
ATACGCCGCT TCACCTATGT ACTTAATGTC AGTATTCCTG ATAATCGAGT AATGGAAAGC
CTGATGGACC AAAGCTTTAA GGGGCTGAGG GTATCCAAGG TGTTCAAACA CCAACTGGCC
ACCCTACCAG AGCTAACACC TGCTCATATC ACTAGTGCGG CCTTTGTCAC TCACAACACA
GGGCTTACAG GTAAGGCTGC CGAGCACAAT ATTGAGGCCA TGGTAAAAAG TACCTTAACG
GCATGTGGCC ATAGTATTCA TGCCAACAAC TACAAGCCAC AACTCCCCTT CTCTACCGAG
TATCTCAACA TCAGAAAAGG CAACCAAGCC ATTGGCCAAT TAGAGAAAGC CATTAACCAA
CAATGTGATA TACGCACCTT GTTAGTGGGT CCACCGGGAA CAGGCAAAAC GGCGGCTGTT
GAACACTTGG CCAACATGAG TAACCGAGAG CTGGTGACCA TCAGGTGCTC AGATGTACTC
GGTAAGTACG TGGGTGAAAG CGAGAAGAAT ATCGCCCGTA TCTTTCAAGA GGCCGACAAT
AACAACTGCA TCTTGTTCTT CGATGAGGTG GATAGCCTAC TGCTAGATAG AGGCGGCTTA
AATGCCAGCT GGGAGATACA ACAAGTTAAT GAACTGCTGA CACAGATGGA GTGTTTCAAT
CAACCATTCT TCGCAGCAAC GAATTACTCC GAGCGTCTAG ATAGAGCTGT GATGCGTCGA
TTTGATTTCA AGCTATCATT TGATTATCTG ACAGAGAAAC AAGCTCAGAA TCTCTTTAGG
AGCGTCACAA GCACAGATAC GCTATCAACT CAGACGCTAG ACTCACTCTG CTTACTTAAA
CTACTGACTC CCGGTGACTT TTCTATCTTA AAGCGACGTC AAAAACTGAG CCACTTCAAG
CTAACCACCG ATGAGTGCTT AGCCATTCTC ACCACCGAGA ACAACAGCAA GCCCGGCAAC
AGAACCATCG GCTTCAAGTA G
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| Protein sequence | MTRIHLEPPF PFDNLIVEAS PIRGHQGCAT IYAYSALASG YIDNTDLEDL NSRMIKVVCG
KGIKLGTGNK LNTLKRHLKK QGLQANTSNL DHNCKLLSQG LELPNDGWKV VRFIAVMNVN
RGLFDLINKV LPEDNYANAM FACMFDMPET KLIEVLKALA TTGLFDQFFD SSLIDFMNLP
QAITSLLLGA KVEYYINLIE PFIQSKPKSE LKLRHFSHLE CDTLQQFLDI SINHSMQGIN
ILLYGLPGTG KTELAKVLAD KTQSHLIAIK PVGDEVSEER GQFKKQAFSS NLRLQYLTLV
QRLVSPDEKT LLLIDECEDI FEQSISHRGY GKDMLHELME QNTIPTIWIT NHIDVIPHSC
IRRFTYVLNV SIPDNRVMES LMDQSFKGLR VSKVFKHQLA TLPELTPAHI TSAAFVTHNT
GLTGKAAEHN IEAMVKSTLT ACGHSIHANN YKPQLPFSTE YLNIRKGNQA IGQLEKAINQ
QCDIRTLLVG PPGTGKTAAV EHLANMSNRE LVTIRCSDVL GKYVGESEKN IARIFQEADN
NNCILFFDEV DSLLLDRGGL NASWEIQQVN ELLTQMECFN QPFFAATNYS ERLDRAVMRR
FDFKLSFDYL TEKQAQNLFR SVTSTDTLST QTLDSLCLLK LLTPGDFSIL KRRQKLSHFK
LTTDECLAIL TTENNSKPGN RTIGFK
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