| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4223 |
|---|
| Symbol | |
|---|
| ID | 5611634 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5189255 |
|---|
| End bp | 5189968 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640935182 |
|---|
| Product | short chain dehydrogenase/reductase family protein |
|---|
| Protein accession | YP_001475955 |
|---|
| Protein GI | 157377355 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0790726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAACGA TAGTAATCAC AGGTTCTAGC CGAAGGTTGG GCTTATTCCT GGTAGAGAAA
TTTCTTTCTA TGGGCGACAC AGTGATCGCT ATAACAAGGA GTCCGTCTCA AAATTTTCAA
TCGATTAGTT CAGAGCATTT ACAACTCATT CAAATAGACA GTTATGACCA ATTCGGCATC
ACTAAGGCAA TGCAGGAGAT CGAAACTCTC GCTGAAAGAG TCGATCTGCT GATAAACAAT
GCCTCAATGT ATGATGTAGA CCCCGAGAAT TTTGAAGAGT TAGAAAACCA TTATCTCTCG
CTATTTAATG TTCACATGCT GTTTCCCACT CTTTTAATCA CAGCCTTGAA GGAACATATG
TACAGCGAAA GTACGCCCGG TGTGGTGGTC AATATCACGG ATATTTATGC CGATAACCCA
AATCCGGAAT ACGCGCTGTA TTGCTCGACT AAGTCGGGAT TAGAGAGTCT GACTCAGTCA
TTTGCAAAGA AATTTTCGCC GGGAATACGT TGCAACTCCA TCATGCCCGG CCCGATACAG
TTTCTTGAGC AGCACACAGA ACATCAAAAA TCAGAGGTAT ATAAGGAGAC TCTACTACCG
TTCGAAGGTG GTTATATGCC GGTCTTTCAA GCCGTGACTT TCCTGCTCGA CAATCATTAT
GTTACCGGAA CGAGTATTAA AGTTGATGGC GGTAGGTCCA TCTGTAGGGG GTAG
|
|---|
| Protein sequence | MRTIVITGSS RRLGLFLVEK FLSMGDTVIA ITRSPSQNFQ SISSEHLQLI QIDSYDQFGI
TKAMQEIETL AERVDLLINN ASMYDVDPEN FEELENHYLS LFNVHMLFPT LLITALKEHM
YSESTPGVVV NITDIYADNP NPEYALYCST KSGLESLTQS FAKKFSPGIR CNSIMPGPIQ
FLEQHTEHQK SEVYKETLLP FEGGYMPVFQ AVTFLLDNHY VTGTSIKVDG GRSICRG
|
|---|
| |