| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4222 |
|---|
| Symbol | |
|---|
| ID | 5611500 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 5188354 |
|---|
| End bp | 5189157 |
|---|
| Gene Length | 804 bp |
|---|
| Protein Length | 267 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640935181 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001475954 |
|---|
| Protein GI | 157377354 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.0872953 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAACT CAGCTCCCTT ATACCTAATT TTGCTCTTTA CTTGCCTCAT TAGCGGATAC
CTTGCGGCTC AACCATTGAA GATCGTCTGC CACGAGTTCG CCCCCTTTAG TTATCAGGAC
CAGCAACAGA ATATCACCGG AATACTTGTG GAGATCGCAC GCCTGGCTTG TCAGGATTGG
CCTCAAGGCT GTGAGATAGA GTTGCTTCCC AATAAACGGG CAAAACAGCA GTTCAATCAG
GGGCTGGCCC ACGGACATTT TCAGGGGTGG AACGAAGAGC GGGCACTCAC GACCTGGTTC
TCTATTCCAC TACTGCAAAC AGAATATGGT TTTTACTCAC CATTGGCACA ACCCCTGACA
GATCTCAAAC AGACCTCAGG CAAGAACATT GGCGCCTTCG GCCCCTCAAA TACACTCACA
TCCTTGATAA ATATCGACAG GCAACAGGTA CGACTCGGGC TTCCCCCTAT GGAGATTATT
CTATCCAGCT CCGGCGATGA GCAGCCATTG AAGATGCTGC ATAAGAGACG GTTCGATGCC
TACTATGTCA ATAAAGAGGT CGGGGCCTAT TACGCCAAAC ATCTAGGTTT GAATGACCTA
TATTACCTCT CCAGCGGCCA GCCGATACAT TACTTCATCG GGTTCAAGAT GAAACATAAT
GAGTATGAAA CGATTAAGGC ATTTAACCAC CTGCTGGTAA AGCTATATCA AAATCATCGT
TTCGATGAGA TATTTGCAAA ATGGAAGATG ATCCCTTCAC CGCTTCTGCC GACCGAGTTT
CCCGACCTGA ATGTACCTTA TTAA
|
|---|
| Protein sequence | MVNSAPLYLI LLFTCLISGY LAAQPLKIVC HEFAPFSYQD QQQNITGILV EIARLACQDW
PQGCEIELLP NKRAKQQFNQ GLAHGHFQGW NEERALTTWF SIPLLQTEYG FYSPLAQPLT
DLKQTSGKNI GAFGPSNTLT SLINIDRQQV RLGLPPMEII LSSSGDEQPL KMLHKRRFDA
YYVNKEVGAY YAKHLGLNDL YYLSSGQPIH YFIGFKMKHN EYETIKAFNH LLVKLYQNHR
FDEIFAKWKM IPSPLLPTEF PDLNVPY
|
|---|
| |