| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4215 |
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| Symbol | |
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| ID | 5611862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5178164 |
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| End bp | 5179222 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640935174 |
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| Product | porin |
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| Protein accession | YP_001475947 |
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| Protein GI | 157377347 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.489674 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATACGA TGAATACACT AAAATCACTC GTGGCGATTG CCGTTGGTCT ATGTAGCTAC
AACGCCCATG CCGATGATGC ACAAACTCTA GAGCAACGCA TTGCGAATCT CGAAAACAAC
GCCGCACCAT CACAGTTTAA AAACAGCCAG GTAAGTCTAT ACGGTTCAAT CCGTCCAACC
CTTAGCTACC TGGATGATGA TCAGGATAAA ACCTGGGATG TTCGTGATGC CCTGTCTCGC
GTCGGCATCA AGGCCAGCAC AGAGTTTGCC GATGGCTGGA GCGCTATCGC TCAGGGTGAG
TGGAGCGTCG ATATCGCCAA CTCAGGGAAC TTTGGTAAGG CACGTCAGGC CTATGCCGCT
ATCGCTTCAC CTTACGGACA GGTAGGTATT GGTAAGCAAC GTCCGGCTCA ATACACCTTA
GTTGCCGAGT ACGTCGATAT CTTTAACCAT GGTAACAGCC CATACGCTTA TGACCATGAG
AGCCCATTCT TCGTGGATAA CTTCGTGACC TATAAGCTGG TAACAGGTGG TTTCACCTTG
ATGGCAGGTG CACAAGTTGA CGGCAATAGC GGTGACACTG GTGCCGATAT GGTCAACTTA
GGTGTCGGTT ACGATTTAGA CCAACTACAC CTTGGCCTAG GTTATGTCAG CCAAAACACA
CAGACCGATG CCGGTATCGA AGGCGATGAC CAGACTATTG GCGGCGTCGT CGCTTATACC
TTCAGCAACG ATCTCTATGT CGCTGTCAGC TATCAGGATA AGCAATATAA CTTCGATGCC
TTAAGCCAGG ACCGAAGTGG CAGCACATTA GACAGTGCAC TGGCCTACCC TATTGCTAAA
AACTACAAGG TTAAACTGGG TTACTTCCAG TTTAAAGATG GCATCAATGA CAACACATCA
GCCGACTATG ATGGTTTCAA CACTACCCTT GAGTGGAACC CAACCTCAAA TGTACGTGTT
CATCTTGAGT ACTTAGCCAA GAACTCTGAC AACCGCGCCG ATGATCAAGC GTTGACCTTA
GGCTTCAGAT ACGACTTCAA CCTGAATTGG AAAGGTTAA
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| Protein sequence | MNTMNTLKSL VAIAVGLCSY NAHADDAQTL EQRIANLENN AAPSQFKNSQ VSLYGSIRPT
LSYLDDDQDK TWDVRDALSR VGIKASTEFA DGWSAIAQGE WSVDIANSGN FGKARQAYAA
IASPYGQVGI GKQRPAQYTL VAEYVDIFNH GNSPYAYDHE SPFFVDNFVT YKLVTGGFTL
MAGAQVDGNS GDTGADMVNL GVGYDLDQLH LGLGYVSQNT QTDAGIEGDD QTIGGVVAYT
FSNDLYVAVS YQDKQYNFDA LSQDRSGSTL DSALAYPIAK NYKVKLGYFQ FKDGINDNTS
ADYDGFNTTL EWNPTSNVRV HLEYLAKNSD NRADDQALTL GFRYDFNLNW KG
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