| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4208 |
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| Symbol | |
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| ID | 5611914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5167982 |
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| End bp | 5171020 |
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| Gene Length | 3039 bp |
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| Protein Length | 1012 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640935167 |
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| Product | molydopterin dinucleotide-binding region |
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| Protein accession | YP_001475940 |
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| Protein GI | 157377340 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGAC GTAAATTTTT AACCCGAGCG GGTATCGTTT CTGTTGCCGG CGCTGCGACA
GTCGCTTGTG GCGATAAAGG GCATACCAAT GGGCCTAAAC GTAGCCAGGA TGTGGCACAT
TTCGGTCACC CAATTCCTCC TGAGTGTCAG CAGGGCAGTG ACGGCCAGTG GCAGAGAACG
CCAGGCATTC GTACCGCTTA TTCACGCTGC TTTAGCTGCT ACAACATCTG CGGCCTGCGG
GTACGTATCG ACGAAGCCAA TGACAAGGTT CTGAAAGTCG GTGGTAACCC CTATTGTGAG
AACAACTCTG GCGCTCCATT GCCGATTGAT ACGGCAGTGA AGCAAAGCTA TGTTGCCTTG
GCGGGTGAGG CCGGACTCGA AAACCGTGCC ACTACCTGTG CGAAGGGAGC AAGTTGTGCC
GATTCGGTCG ATGATGAACG CCGTGTGACG CAGGTGCTTA AGCGTGCGGG CAAGCGTGGC
GAAGGCAAGT GGGTCACTAT CAGCTATGAG CAGGCACTAT CAGAGATCGT AAACGGTGGG
GATCTGTTTG GCGAAGGCCA CGTTGAGGGC TTAAGGGCGG TACGCCAGCT CGATAAGCAA
GTTAAACCCG GATACCCGGA GTTTGGCACA GCGGCTAACC ACTTGTTTGC TACCTTCTGC
GCCGAAGATA CGCTGCGCGG CAGTTTCTAT GCACGCTTTA TGCAGCAATC ATGGGGTACC
AGCAACTTAG GCACTAAACA CGCCTATTGT GGCGCGGCGC AGGTGACGGG TTTTTCTCTG
GGTATGTCGC CGGACTTCGA AGAGTGGCTC AACGATGTCG ATTGGGAAAA TGTCGAATAT
GGCCTGTTTA TGGGCACCAG CCCGGGGTCA TCGGGTAACA GTCTCAACCG GGCCGGTCGT
GGACTTGCCG ATAGCCGGGT CGATAGAAAG TTTAAATATG TGTGCGTCGA TCCACTACTG
CGTACCACAG TTGCTGCAGA TACCAATGCC AAGTGGTTAG CGGTTAAACC GGGCCAGGAT
GCGGCGTTCT CCTTCGGTGT TATTCGCACC ATGCTCGAAG AGGGGTTGTT CAACAAGGTC
CATCTCGAAG GGGCAAGTGA GAAGGCGGCG AAGGCGGCGG GCGAGCTTAA CTATACCAAT
GCCGGACACT TGGTGGTGAT GGATCCTAAG CATCCTAACT ACAAAGGATT TGCGAAAGCG
GCTGATTTCG GTCTCGGTGG TGATGAAGCG TTAATCATCA AGTCGGGTAG TCAGACCCTG
GTGTCTGCCG AATCGGGTGA CAAGGCTGAG CTGTTTGTCA GTAAAACGCT TAAAGACAGT
AAGGGCCGCA GGGTTAAGCT GGTCTCCTCC CTGTCTCTGC TTCGCGAAGA AGCACAGCGC
ACCAGCATGA AGGTCTATGC CGAGCAATCG GGGATAGCTG TCGAAGATAT GCGTCAGGTG
GCGAAAGACC TGGGCCATTA TGGCCGTAAG GCCTGTATCG CGGGTAACGG CGGTACTAAC
TCCTCCGATG GCTTCGTGAT GGGTTGGATC TGGGCAACGT TAAATACCTT AGTCGGATCC
CACGACGCTA AAGGTGGCGC GAGCTATGGT AACGGACCTA TCGGCGGCAT GGAAGGGCGC
TACGATCTGG CTAATATCGC CGATGGTGTC AGTTTAGATG GCGTAGTCAA TGCCTGTCGT
GATGGTGCCT ACGAGTCTTC AACCGAATAT AAGCAGAAGG TTGCCAAGGG GCAAAATCCT
TATCCAGCCA GCACGCCATG GCACGAAGCA CTGCCGGCCA TGAACGCGGC AGAGCAGTGG
ACCAGTCATG CTAACGCCGA CCCATATCGG GCCAAGGTGC TGTTCAACTG GCGTAACAAC
TTCCTCTATA GTGCGGCATC GATCAGCCAG GAAGTTGTGG CGAGCATCGC CGATCCTAAG
CGTCTGCCGT TAATTGTCGG CATCGACTGT CACATGAATG AGACTAACCG TTATGCGGAT
TATTTCATTC CGGATCGCTC AATGCTGGAA GAGTATGCGG CGGATCGTAT GTGGGGCTCA
CATATGCTGG GCATCGTTGC GGCATCGCCA TTGGTCACAC CCAGAACAGT TAAAAACGAA
CGTGGTCAGC ATGTGTGTAT GGAACAGCTG TTGATCGATA TCGCCCTGGA GATGAAGCTA
CCAGGCTTCG GTAAAGGTGC TATCGCTCAC GCGGATGGCC ATCAATCAGA TCTGCTATGT
TTCGAAGATT GGCATGCTAA GTATCTGGCC AACGTTGCGG CTCAGTGTGA AGACCTGCCT
AAGGTGACGG CTGAGGACAG AGAGTGGGCC GGGCTGGATT ATGCGATGAA GCCACTGACA
CCAAGACTGA CCCCAACCGA AACGAGTCAG GTCGAGTCTC TATTGTCTCG AGGTGGTTAC
TATGTGGCGG ATGATCGTTA TGACGGTGAG TTCATCAAGG GGGCGGGGGC TAAGTGTCTG
CAGATCTATC ATGAAGCAGT AACACACTTG CGTCATGCGT ACTCCGGAGA GCGTTATCCT
GGCACTATCA CCTATCAGGA ACATAAGTTC TGGAATGGAG ATACCTGGGA GAGCCATTGG
CCTAAGTCTG AGTACCCTCT GTTGTTCTCA AGCTACAAGG CGACAGTGCG CTCTAACTAT
GCGGTGGCCT ATAAGCGTAT CGCCGAAATT AGTCCTACTA ACTATGTCTA TATGAACCTA
GACACAGCCA ATGAGCAGGG CTTAAGCGAC GGCGATAGCG TGAAGCTGAT AACTGCGAAT
GGCAAGCCTG CCGTTGGTCT GTTGCAGACC GATTCGGGTG TTGCTAAAGG TGCTGTGTGT
GTATCCCATG GGTTTGGACA TTCACAAGGC TTCGGAGCTG ACAATCGAGT CATCAATGGC
AAGTCAGTGC CCGGACTTAA GGAACGTGCG GGAGGAGTCG CAATCAACCA GATGATACCG
TCTGATCCAA CCCGTAAAAC CAAGGCCAGC ATGCTCAACG ACTACTGGAC CGGTGCCAAC
TGTCGTCACG GTGTGCCGGT ACGTGTAGAG AAGGCATAA
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| Protein sequence | MDRRKFLTRA GIVSVAGAAT VACGDKGHTN GPKRSQDVAH FGHPIPPECQ QGSDGQWQRT
PGIRTAYSRC FSCYNICGLR VRIDEANDKV LKVGGNPYCE NNSGAPLPID TAVKQSYVAL
AGEAGLENRA TTCAKGASCA DSVDDERRVT QVLKRAGKRG EGKWVTISYE QALSEIVNGG
DLFGEGHVEG LRAVRQLDKQ VKPGYPEFGT AANHLFATFC AEDTLRGSFY ARFMQQSWGT
SNLGTKHAYC GAAQVTGFSL GMSPDFEEWL NDVDWENVEY GLFMGTSPGS SGNSLNRAGR
GLADSRVDRK FKYVCVDPLL RTTVAADTNA KWLAVKPGQD AAFSFGVIRT MLEEGLFNKV
HLEGASEKAA KAAGELNYTN AGHLVVMDPK HPNYKGFAKA ADFGLGGDEA LIIKSGSQTL
VSAESGDKAE LFVSKTLKDS KGRRVKLVSS LSLLREEAQR TSMKVYAEQS GIAVEDMRQV
AKDLGHYGRK ACIAGNGGTN SSDGFVMGWI WATLNTLVGS HDAKGGASYG NGPIGGMEGR
YDLANIADGV SLDGVVNACR DGAYESSTEY KQKVAKGQNP YPASTPWHEA LPAMNAAEQW
TSHANADPYR AKVLFNWRNN FLYSAASISQ EVVASIADPK RLPLIVGIDC HMNETNRYAD
YFIPDRSMLE EYAADRMWGS HMLGIVAASP LVTPRTVKNE RGQHVCMEQL LIDIALEMKL
PGFGKGAIAH ADGHQSDLLC FEDWHAKYLA NVAAQCEDLP KVTAEDREWA GLDYAMKPLT
PRLTPTETSQ VESLLSRGGY YVADDRYDGE FIKGAGAKCL QIYHEAVTHL RHAYSGERYP
GTITYQEHKF WNGDTWESHW PKSEYPLLFS SYKATVRSNY AVAYKRIAEI SPTNYVYMNL
DTANEQGLSD GDSVKLITAN GKPAVGLLQT DSGVAKGAVC VSHGFGHSQG FGADNRVING
KSVPGLKERA GGVAINQMIP SDPTRKTKAS MLNDYWTGAN CRHGVPVRVE KA
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