| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4177 |
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| Symbol | |
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| ID | 5612323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5136484 |
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| End bp | 5137248 |
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| Gene Length | 765 bp |
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| Protein Length | 254 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640935136 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001475909 |
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| Protein GI | 157377309 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.526119 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACTGCC CAAATAATAG TGTCGATGCT TTAAGGTGTA ATCAATTACT CGACGTAGCA
GAGAATTTGA TTGATAAACA AGGGGTTGTA TCTTTTAGGT TTGCGCAGAT AGCTAAAGGG
GCAGAGTGCT CAACTAATAC TCTATATAAA TATTTCGAGT CGAAAGAAGA TGTACTTATA
TGTTTATTTT TAAGAAATAC AACATCGACT CAAATACCTG TTTTTATAAA AGAACACCCA
GAGTTAGATA TTTACCAAAA AGCTGTTCTG CCTCTATTGT TTACTTTTGC CGTTGTTAAA
CGCAGCCCAA TATTTAATAT TTTGAGAGTT GTATCAATAA ATAGCATGTT TTGGCAATTG
GCAAGTCCTG AAAAAATTGA GGTGCTTCGT AATAGGGTCA ATCTATTCTG GAGTTGTATT
CGGGTACCTT TGGAAGATGC CGTTAATTCC GGTGAGCTGG AAGCCACCGA ACTCGATATT
CGCGACCTGA CTCAGTCACT CTATTTTTTC CTCGCAGGGG CAGCCTCCAC CTATGAGAGT
CGGTTAATGG ATGAGAAGTA TTTCACCAAT GATGACGAAA CCAGTCTGCG ACATATCAGC
CGCTTGATGA ACCGATATCA ATGGAAGCGA CCTATCACTC AGGAGATGAT GCAGGATATG
ACATTGCGCA TCAGTGAGTT TCTAGATAAA GGTAAGACTA AGATCCGAAG CTGTGAGACC
TGTTTGGGCA TAGGCAAGCA ACTGACTTGC CGCGACGATG AGTAG
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| Protein sequence | MYCPNNSVDA LRCNQLLDVA ENLIDKQGVV SFRFAQIAKG AECSTNTLYK YFESKEDVLI
CLFLRNTTST QIPVFIKEHP ELDIYQKAVL PLLFTFAVVK RSPIFNILRV VSINSMFWQL
ASPEKIEVLR NRVNLFWSCI RVPLEDAVNS GELEATELDI RDLTQSLYFF LAGAASTYES
RLMDEKYFTN DDETSLRHIS RLMNRYQWKR PITQEMMQDM TLRISEFLDK GKTKIRSCET
CLGIGKQLTC RDDE
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