| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4168 |
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| Symbol | |
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| ID | 5612349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5125970 |
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| End bp | 5126797 |
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| Gene Length | 828 bp |
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| Protein Length | 275 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935127 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001475900 |
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| Protein GI | 157377300 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCTTAA GTTCTTACTA TTTAGTGCTT GCCCTCTTAC TTCCCCTATT TGCGGCGCCT
TCGATGGCGG AGCAAAGTTA CCTGCAGCCT AAGTTAAAAT TTTGTGTAGA AGACACTGAG
TTTCCGCCTT TCAATTACTT CAAACGAATC GATGGAGAGA AAGGGCAATC CAGCGGCTAT
GATATCGATC TACTCAAACT CGTTTTCGAG CCCTCAGGTA TCGAGTATGA GGTGATAGCC
CTCCCCTGGC GACGATGCCT CAAAGAGGTC AGCGAAGGAA TTATCGATGG CGTGATGAGC
GCCTCTCTCA ATCCTCAACG AGCTAAAGAC TATCTTCACT CTGACGCCTA TTACTTTCTA
AACCCCAGCT ACTTCTACCT CAGGTCTGAC TTCCCCGACG GGCTGGAGAT ACAGGCCCTC
TCCGAACTGG AAAGTCATGG AAACATCTGT GGAATCAAGG GATTCAACTA CATTAATTTT
GGTTGGGTAA ACCTAACCCG GCTCTATGAG ATCAATGAGA TTGCACATCT ACCAACTATG
CTGCAAAAGA AACGTTGTCG CTTCTTTCTG GCCCGCAAAG AGACCCTGGC TGGTACCTTA
GCCCTCAATC ATCTCTATCG GTTTGAACGA CTGCTGGGAA GGAGTACCGT TCCAAATCTC
CGGCCGGAAC CCTTCCATAT GTTGATATCA CGCAAGTCTC CTTCTGCAGA GCTAATCAAT
AAACTATTCA ATGAAAAGGT CAAACAGCTC ACTCTCAATG GTGAGCTTGA AAAACTACTC
GCACACCACC TCAATCAACT CAGGCTAAAT GCCAAAAATA ACGACTAA
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| Protein sequence | MTLSSYYLVL ALLLPLFAAP SMAEQSYLQP KLKFCVEDTE FPPFNYFKRI DGEKGQSSGY
DIDLLKLVFE PSGIEYEVIA LPWRRCLKEV SEGIIDGVMS ASLNPQRAKD YLHSDAYYFL
NPSYFYLRSD FPDGLEIQAL SELESHGNIC GIKGFNYINF GWVNLTRLYE INEIAHLPTM
LQKKRCRFFL ARKETLAGTL ALNHLYRFER LLGRSTVPNL RPEPFHMLIS RKSPSAELIN
KLFNEKVKQL TLNGELEKLL AHHLNQLRLN AKNND
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