| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4163 |
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| Symbol | |
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| ID | 5612416 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5119700 |
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| End bp | 5120623 |
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| Gene Length | 924 bp |
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| Protein Length | 307 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 640935122 |
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| Product | branched-chain amino acid aminotransferase |
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| Protein accession | YP_001475895 |
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| Protein GI | 157377295 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0115] Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase |
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| TIGRFAM ID | [TIGR01122] branched-chain amino acid aminotransferase, group I |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGCAA AGAAAGCTGA GTTCATTTGG TTTAATGGTG AAATAATGCC TTGGGGTGAT
GCCAAGGTGC ACGTTATGTC ACATGGCTTG CATTATGGCT CATCTGTCTT CGAGGGGATC
CGTGTCTATG ATACTCACCT TGGTCCTGCT GGATTTCGCT TGACCGATCA CGTCCAGCGT
CTGTTCGACT CGGCCAAAAT CTACCGCATG CCAATCCCTT ACACTTTTGA TGAGGCGATG
CAGGCGTGTT GTGATAGTGT GCTAAAGAAT GATCTCAAGA GTGCCTATAT CCGTCCTCTG
GCCTTCTATG GTGACATAGG TATGGGGATC ACTCCGCCGA AAGATGCCGT TTGTGACTTG
ATGGTGGCAG CATTCCCCTG GGGCGCCTAT TTAGGCGAAG ACAGCATGGA AGCCGGGGTC
GATGTTGCCG TGAGTTCCTG GAATCGCCTC GCGCCCAACA CCATACCGAC CGGCGCTAAG
GCCGGAGGTA ACTACCTGTC ATCGATACAG ATATCGACGG AAGCGAAGCG CAATGGTTTC
CATGAAGGGA TAGCGCTGGA TGTCAATGGC CTGGTCAGCG AAGGCGCCGG TGCTAACCTG
TTTGTGGTTA AGAAGGGCAA GATCTACACG CCACCGGCAA CGGCAGCCAT CTTGATGGGC
CTCACCCGGG ATAGCATTAT CACCCTGGCA CGAGATCAAG GTTACGAAGT GGTAGAGGAG
GCGATGTCCC GTGAGTTTCT CTACCTTGCC GATGAGATAT TTATGACAGG CACCGCCGCC
GAAATTGTAC CTGTACGCAG CGTCGATCGC ATCGACGTAG GCTGTGGTAA GCGCGGGCCG
GTGACTAAGG CGGTTCAAGA CAGCTTCTTC GGTCTGTTCA ATGGCGAGAC ACAAGACAAG
TGGGGCTGGC TGGAAGTGCT GTAA
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| Protein sequence | MTAKKAEFIW FNGEIMPWGD AKVHVMSHGL HYGSSVFEGI RVYDTHLGPA GFRLTDHVQR
LFDSAKIYRM PIPYTFDEAM QACCDSVLKN DLKSAYIRPL AFYGDIGMGI TPPKDAVCDL
MVAAFPWGAY LGEDSMEAGV DVAVSSWNRL APNTIPTGAK AGGNYLSSIQ ISTEAKRNGF
HEGIALDVNG LVSEGAGANL FVVKKGKIYT PPATAAILMG LTRDSIITLA RDQGYEVVEE
AMSREFLYLA DEIFMTGTAA EIVPVRSVDR IDVGCGKRGP VTKAVQDSFF GLFNGETQDK
WGWLEVL
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