| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4158 |
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| Symbol | |
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| ID | 5612372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5112500 |
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| End bp | 5113936 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935117 |
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| Product | aspartate kinase |
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| Protein accession | YP_001475890 |
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| Protein GI | 157377290 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCTGC AGTTTTTAGG GGCGACGCAA GAGGTCACCG GCTCTTGTCA TCTGCTGGAG
GTGGATGGCC AGCAACTGCT GTTAGACTGT GGACTTATTC AGGGGGGAAA GGCTGACCAG
CTACGTAACC ACGAGCCTTT TCTGTTCGAA CCGAAGGTCA TTGCCGCCGT CGTATTAAGT
CATGCTCATA TCGATCATTC GGGTCGTCTT CCGCTACTGG TGAAGTCCGG ATTCTCAGGC
CCTATCTTTA CCCATAAAGC GACCGCAGAG CTGTGTGCCA TCATGTTAAA AGACGCGGCA
ATGCTGCAGC GACGTGATGC GGAAAGATTG AATAAGAAGC GGGTCAAGCA GGAGATGGAG
CCCATCGAAC CACTCTTTAT TGAGGAGGAT GTCGATAGGG CTATGGCTCA GTTTGTGCTG
CTGGATTATG GCGATATGAC CCGGGTCATC CCCCACGTGG ATATCTGCCT CTCTGATGCC
GGCCATATAT TGGGATCGGC GATAGTCGAG CTTTTCTTAG GGGAAGGAGT TGAGCAAAAG
AAGCTGGTTT TCAGTGGCGA CTTAGGCCGT GCGGGTATGC CCTTATTGGA AGACCCCAGT
ATTGTCGACA GTGCCGATCT GGTGATGATG GAGAGCACCT ACGGTAACCG CATGCACCGT
AGTTGGAATG ACACGATCGA AGAGCTGAAA CAGATTTTCT CTAAAGCGAT CAGTGAAAGT
CATGGCAATA TTCTTCTGCC GGCATTTTCG GTGGGGCGCG CTCAAGAGCT GTTATATCTG
TTTCACCTTT ACGCAAAGGA GTGGGATCTG CAGCGATGGA AAATCTGCCT CGATAGCCCT
ATGGCGATAG AGGCGACTAG TGTCTACCTG AATAACTACC CCTTGATGGA CGATGATTTT
AAGCGTTTCA CCCGCATGCA TCCCGGTCAA CATCCCCTGT TATCCAATGT GGAGTTTATT
CTCAGCACCG ACGAGTCCAT GTTGCTCAAC GATGTGCATA AGGGACTCAT CATCATTGCC
GGTAGTGGTA TGTGTAATGG TGGGCGGATC CGATGTCATC TGGAGCATAA CCTCTGGCGC
AGTGAGTGTG ATGTGATCAT CTGTGGTTAT CAGGCCATCA GTACGCCGGG TCGGTTGATA
GTGGATGGGG CCGAGCAGCT CACGATTAAT GGTAAGAGTA TAGATGTGGC GGCGTGCATT
CATACGGTCG GTGGTCTCTC TGCACATGCG GATCAGGCCG AGTTGTTACA CTGGTATCGT
CATTTTAAAG AGAGGCCACC ACTCGTCTTG GTGCATGGTG AGTCTGAGGC GCAAGAGGGG
CTGGTCGATA AGTTGCGGGA GGATAACAGC ACTTGCCCAC AAGCCCTCGC TATTGCCACT
TATGGAGACA AGCTCGACCT GAATTCGTTA CCTGAATTGA CCTGGATAAA GCCCTGA
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| Protein sequence | MTLQFLGATQ EVTGSCHLLE VDGQQLLLDC GLIQGGKADQ LRNHEPFLFE PKVIAAVVLS
HAHIDHSGRL PLLVKSGFSG PIFTHKATAE LCAIMLKDAA MLQRRDAERL NKKRVKQEME
PIEPLFIEED VDRAMAQFVL LDYGDMTRVI PHVDICLSDA GHILGSAIVE LFLGEGVEQK
KLVFSGDLGR AGMPLLEDPS IVDSADLVMM ESTYGNRMHR SWNDTIEELK QIFSKAISES
HGNILLPAFS VGRAQELLYL FHLYAKEWDL QRWKICLDSP MAIEATSVYL NNYPLMDDDF
KRFTRMHPGQ HPLLSNVEFI LSTDESMLLN DVHKGLIIIA GSGMCNGGRI RCHLEHNLWR
SECDVIICGY QAISTPGRLI VDGAEQLTIN GKSIDVAACI HTVGGLSAHA DQAELLHWYR
HFKERPPLVL VHGESEAQEG LVDKLREDNS TCPQALAIAT YGDKLDLNSL PELTWIKP
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