| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4156 |
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| Symbol | |
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| ID | 5612573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5108743 |
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| End bp | 5110101 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935115 |
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| Product | sodium:neurotransmitter symporter |
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| Protein accession | YP_001475888 |
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| Protein GI | 157377288 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0733] Na+-dependent transporters of the SNF family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGCA CAAATTCAAA TCACTTTAGC TCACGATTGG GCTTTATTAT GGCAGCGGCA
GGTTCAGCCG TTGGCGTCGG TAATATTTGG GGCTTCCCCA CTCAAGCCGC AACCCATGGT
GGTGGTGCTT TCCTGCTTGT ATACCTGATA CTGATCCTAA TCTTAGGTTA TCCAATGCTG
GTTGCCGAGC TGATGATTGG ACGTCACGGT CAGACTAACC CTGCCGATGC GATGGCTAAA
CTTGGCAACA ACACGCTAAG TAAGAAAATC GGTAAAGTGA TCGGTTTCAC CTCAATTGTC
ACCGCAACCT TGATCTGTAC CTTCTACACC ATATTGTCGG GTTGGTTTGT CAGCTTTGCC
CTGGCACCTG TAGCAGAAAT CTTTGGTTTT ACGGCGGCAT CTGATTGGTT AATGGATTTC
TCCCTGTCAC GTAATCTGCT CTTCACAACC ATCTTCATCT TGATGGTTAT CTACGTGATA
CGCCAGGGAG TACAGCAGGG GATCGAACGC TGGTCCAAAC GCTTAATGCC ACTGCTTCTG
ATGATATTGG TATTAGGGGC GGGCTATATC TTGACTCTAC CCGGTGCGAT GACAGGGCTT
AAAGTACTAT TGATACCGGA TTTTTCCCGA GTCTGGGATC CAGATGTTCT CGTCGGCGCT
CTGGGGCAAA CCTTCTTCTC CCTGACCATA GGTACGGGTG CCATGATGGT CTACGGCGCT
TATTTAAATA AGAATGAACA CTTGGGTAAG CTAACGGCCT ATGTAACCCT TACCGATACC
AGTGTGGCCT TCTTAGCCGC ATTAATGATT ATCCCGGCTA TGTATGTGGC TCAACACAAT
GGGGTGCAGA TCTTCGGTGA AGATGGCAGC CTATTAAACT CAGACACCTT AGTGTTTACA
GTACTGCCCG CACTGTTTGA CACCTTAGGG GGTAACTTAC AATACCTGCT GGCCTTTATC
TTCTTCATGT TAATGACCAT AGCAGGCCTT ACATCTGCAA TTTCGATTGT CGAAGTGCCC
ACCAGCTACC TGATGGAGAA AAGGGATATG GGGCGTAACA AGGCCACTTA TCTGGTTGGC
GCACTGATTA TTGTCCTGTC CCTTACCGTG GTGATGAACT TCGAGCATCT GTTTGGCTTT
ATGATCACCT TAACCACCGA GCGCGCCCAG CCACTCATCG CCTTAGGTAT CGCCATCTAT
CTGGGCTGGG TATGGCAGAG AAATGGCCTG CTTAAAGAGA TCCTGGCTCA GGATGGCGTC
GATAGCAAAA GTCTGTTCTG GCGTGTCTGG CCCGTTTATG TGAAATTTAT CTGTCCACTG
CTTATTACGC TCATTATCGT GCAGCTGTTT AATAAGTAG
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| Protein sequence | MASTNSNHFS SRLGFIMAAA GSAVGVGNIW GFPTQAATHG GGAFLLVYLI LILILGYPML
VAELMIGRHG QTNPADAMAK LGNNTLSKKI GKVIGFTSIV TATLICTFYT ILSGWFVSFA
LAPVAEIFGF TAASDWLMDF SLSRNLLFTT IFILMVIYVI RQGVQQGIER WSKRLMPLLL
MILVLGAGYI LTLPGAMTGL KVLLIPDFSR VWDPDVLVGA LGQTFFSLTI GTGAMMVYGA
YLNKNEHLGK LTAYVTLTDT SVAFLAALMI IPAMYVAQHN GVQIFGEDGS LLNSDTLVFT
VLPALFDTLG GNLQYLLAFI FFMLMTIAGL TSAISIVEVP TSYLMEKRDM GRNKATYLVG
ALIIVLSLTV VMNFEHLFGF MITLTTERAQ PLIALGIAIY LGWVWQRNGL LKEILAQDGV
DSKSLFWRVW PVYVKFICPL LITLIIVQLF NK
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