| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4148 |
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| Symbol | |
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| ID | 5612726 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5099114 |
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| End bp | 5099755 |
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| Gene Length | 642 bp |
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| Protein Length | 213 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640935107 |
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| Product | TetR family transcriptional regulator |
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| Protein accession | YP_001475880 |
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| Protein GI | 157377280 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.677229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATGAAC GTTCATTCAG AGCATCCACT CCTATGAAAG GTACTATGGA TAACAAACGC
GAACTTATAT TTAAAGCCAC CGAGAAGATC ATTGCCACCA AAGGGCTACA AGGTCTCTCG
ATGCAGCAGA TAGCTCAGGA AGCTGGTGTT GCTGCAGGTA CGATTTACCG CTATTTCACA
GATAAGGAGG AGCTGATCTC TGAGCTCCGC AAAGATGTGT TACGTGTAGT GGCGAGCCAT
ATTCTCGAAA ATTGTGAAGA GGGTACGCTC GAACAGAGGT TCAAACGTGT CTGGTTCAAC
ATTGTCGATT TTGGACGCCA AAGAACGCAT GCGAACCTAA GTTATGAGCA ATATATCCAC
CTTCCTGGCA TAGACACCGG CCCGCATCAA GCTTTCGAAA GAAGCACCTT TGAAGGGCTA
CACCACATTT TCACAGAGGG AAGAGATGCC GGGGTATTTC ATAACTTGCA AGATAAAACC
CTGTTTGCCA CCTCTTTAGA ACCGGCTATC GCGCTAGGAA GAAGCATCCG TCGCGGCCAG
ATGCAATACG ATAAAACTGA ACTAGAATTT GTCTGCAACC TTTGCTGGCA ATCCATACTT
ACACCATCAA ACACTACTCA AAAGGAGCAA TCAGGCAGAT GA
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| Protein sequence | MNERSFRAST PMKGTMDNKR ELIFKATEKI IATKGLQGLS MQQIAQEAGV AAGTIYRYFT
DKEELISELR KDVLRVVASH ILENCEEGTL EQRFKRVWFN IVDFGRQRTH ANLSYEQYIH
LPGIDTGPHQ AFERSTFEGL HHIFTEGRDA GVFHNLQDKT LFATSLEPAI ALGRSIRRGQ
MQYDKTELEF VCNLCWQSIL TPSNTTQKEQ SGR
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