| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4145 |
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| Symbol | |
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| ID | 5612949 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5090563 |
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| End bp | 5092485 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640935100 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001475877 |
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| Protein GI | 157377277 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00766642 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTGT TTCGACAGAT ATACTCACTA CTGTTTGGCC TGTTTCTACT GGTGGTGGCG
AGTCTAGGCT ATGTGCAGTT CACTGAGACT CAAAGCTTTC TTACGAAGCA GATGGAGTCA
GATCTTAACA ACACCAGCAA CTCTCTTGGG ATCATGTTAG TACCCGATCT TGAAGCTGGC
GATATTGTCG GTGCGGAAAC ACTGATCAAT GTTATTTTTG AAGGTGGATA TTACCAGCAG
GTAAAATTGA CATGGTTAGT CGACGGCAAA CAACAGGTTT GGGAAAACTC AGTTAAGATT
GAAGGCGTCC CACAATGGTT TATCGACCTG GATCTATTCA AGAAAATCAA GAAGGAGAGT
ACCATCACCT CCGGCTGGAT CCAGCTGGCT CGACTTGAGA TAACCGCTCA CCCGGGGTTT
GGCTATCACG AACTGTGGCG CACGATGAGC AATGCGATTA TCGTATTTTC ACTGCTCTTT
TTAATTGCAA TTGTATTCGC TCGAGTAGGG CTAACTTGGA TCCTCAAACC TTTACATACC
ATCGCGGAGC ACGCTCGAGA GATCTCACAA CGAAAATTTG GCCCGGACAT GCCTGTACCT
AAAACCACGG AGTTAAAGTC CGTCGTACTC GCCTTTAACA GCATGTCAGA TCAACTCAAA
TTAATCTTTA ACTCTCTCGA TGAAGAGGTG GGAGAGCTAC GTAAGAAGAA CTTAGTCGAT
CAAGTCTCAG GCCTTCCAAA CCGCCAATAT ATGATGGGAC ATTTAAGCAG TTGGCTTAAT
GAGCCAAAAA GTGGTGCTCT GGTCATGGCG AAGTTGGATT GGTTAGAGGA GGTGCATAGC
AAATATGGCT ATCAGGTTCG AGATGAAACG ATTAAATTAC TTTCTCAGAA GCTGAAGGAG
CACTTAGATG AGGTCGCGAC TTCTGTTGTA GCAAGAATTG CTGCTTATGA ATTTGCGTTC
TTAATTACCA GCTCAGAACA TGAGCAAACC AGCAAATATC TTCAGACTCT GATCCGCACA
ATTAACCAAG AGATGTCTAA AGCAGGCTGC AAGCCCAATG AAAACTTTGC CATAGGTGTT
GCGGAGCGCA TAGGTCAAAT GACGGTGTCT GACATCTTGG CACAATCGGA TAATGCCCTT
CAAAAAGCCA TAAAAGAGGA TAAAGTTTTT CATTGGTTTG AAAATACCGA GAAACAACTT
TTCACCCGTG AACAATGGCG TGAACACTTG AGCTCAGCGA TCAATGGCCG TCGATTTAAA
TTTAAGTGGC AGCCCGTACA GCACAATGAT AGTGACAATA TCATGCAAAG AGAGTTGTAC
TGTCAGCTTG AACTCGGTGA AAAGATGGTC CATGCAGGGC AGTTTATGCC TTATGTCGAA
CTGTTATCAC TTGGCTCTTT GCTGGATAAG TGTCTCATCG AGAAAGTACA TGAGGATCGC
CTCCTCGATA AGAGTCTTGA GCCCATCGCA ATTAACTTAA CATTCCAAAG TTTGAGCGAT
CCTAAATTCC ATGAATGGCT AAACCAATTC TTACGCTCAA CAGTGTTATC TGAACGCATC
TGTTTCGATA TACCTGAAGC CGGCGTGTAT AGCGATCCTG ATTCCTGTCA GGCACTTTGC
ACGATTATTC GTGATAATGG AGCTCACTTC GGTATCGATC ACTTCGGCCG TCAGTTTGGC
TCCATGTCTT ACCTGCAAAC GCTGAGACCA AGTTATGTGA AACTAGATCA ATCATTTGCC
TATTATGATG AGAGTGAACA CAGTAGCGAA CTATGTCGTG CATTGATCAA TGTCGCAAGG
GGTCTGGATA TTAAGATCAT AGTAACCGGC ATTGAGGAGA TAGCTCAGTT AGATCGCTTC
ATCCCATTGA AAACCAATGC TTACATGGGC TACATATCCC CACCAGTGGA TGTTGAAGAT
TAA
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| Protein sequence | MTLFRQIYSL LFGLFLLVVA SLGYVQFTET QSFLTKQMES DLNNTSNSLG IMLVPDLEAG
DIVGAETLIN VIFEGGYYQQ VKLTWLVDGK QQVWENSVKI EGVPQWFIDL DLFKKIKKES
TITSGWIQLA RLEITAHPGF GYHELWRTMS NAIIVFSLLF LIAIVFARVG LTWILKPLHT
IAEHAREISQ RKFGPDMPVP KTTELKSVVL AFNSMSDQLK LIFNSLDEEV GELRKKNLVD
QVSGLPNRQY MMGHLSSWLN EPKSGALVMA KLDWLEEVHS KYGYQVRDET IKLLSQKLKE
HLDEVATSVV ARIAAYEFAF LITSSEHEQT SKYLQTLIRT INQEMSKAGC KPNENFAIGV
AERIGQMTVS DILAQSDNAL QKAIKEDKVF HWFENTEKQL FTREQWREHL SSAINGRRFK
FKWQPVQHND SDNIMQRELY CQLELGEKMV HAGQFMPYVE LLSLGSLLDK CLIEKVHEDR
LLDKSLEPIA INLTFQSLSD PKFHEWLNQF LRSTVLSERI CFDIPEAGVY SDPDSCQALC
TIIRDNGAHF GIDHFGRQFG SMSYLQTLRP SYVKLDQSFA YYDESEHSSE LCRALINVAR
GLDIKIIVTG IEEIAQLDRF IPLKTNAYMG YISPPVDVED
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