| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4126 |
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| Symbol | |
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| ID | 5610841 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5043931 |
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| End bp | 5044653 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640935081 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001475858 |
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| Protein GI | 157377258 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
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| TIGRFAM ID | [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.426997 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCCACT CTTACATAAG GACACGAGAT TTTCGTGCAA TTAGCTTCGA CCTCGACGAT
ACCTTATACG ATAACCGTCC TGTCCTAAAA CGGGCTGAGG CATCATTAAT GGCGTTTCTC
TATCGGGAGT ACGGTAAGAC TTGTCGATGG GAAAGGACCG ACTGGATAGC GTTAAAAACC
TCCTTGCTGC ATAAATACCC TGAACTGATT CACGATACTA CGGCCGCAAG ATTCGTGATG
TTGGAACAGG GGTTGCTCAT ATTAGGTTAT TCGAGAGCGG ATGCTGAAAC CGGTGCGCAG
CGAGGGCTCG ACCACTTTCT GAAAGATAGA TCTGACTTTA CCGTCTCCAC TTCGATTATC
ACAATGCTTG AGGAGCTGGG CAGCAGGTAC CCCCTGATAG GGTTGACCAA TGGCAATGTC
GATGCAGCCA AGATAGGTTT GGATTCCGTT TTTCAGTTTG TACTCCACCC CGGAGACGGA
ACAAGAAAGA AGCCTTACCC GGATATGTTC TACACCGCAT GTCGAAGACT GAATATTGCT
CATCAGACCT TACTGCATGT TGGTGATAGC TATCTTAACG ATATTCAAGG GGCGAGAATG
GCCGGGTGTC AATCGGTATG GCTTAACCCT GCATATGACA GAACTCGGGT CGACAAAGGC
GCAGGCATGT TACCCCATAT AGAGATCGAC GATATATCTG AGTTGTCAGT ACTTCTTTCC
TAA
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| Protein sequence | MVHSYIRTRD FRAISFDLDD TLYDNRPVLK RAEASLMAFL YREYGKTCRW ERTDWIALKT
SLLHKYPELI HDTTAARFVM LEQGLLILGY SRADAETGAQ RGLDHFLKDR SDFTVSTSII
TMLEELGSRY PLIGLTNGNV DAAKIGLDSV FQFVLHPGDG TRKKPYPDMF YTACRRLNIA
HQTLLHVGDS YLNDIQGARM AGCQSVWLNP AYDRTRVDKG AGMLPHIEID DISELSVLLS
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