| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4103 |
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| Symbol | |
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| ID | 5613133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 5017235 |
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| End bp | 5018029 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640935058 |
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| Product | TatD-related deoxyribonuclease |
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| Protein accession | YP_001475835 |
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| Protein GI | 157377235 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0084] Mg-dependent DNase |
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| TIGRFAM ID | [TIGR00010] hydrolase, TatD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.68948 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGAAC ACATAGACAT CGCTGTCAAC TTGATTGGCA GCGCCCTCGA AAAAAATATT
GATGATGTAA TTCAACGAGC GGCAGACCAA GGTGTTTCGC CGCTAATTGT TATCGGCAGC
AGTCTGAGCG AAAGCGAAAA AGCTATCCAA TGCTGTCAGC AACACCTAAA CCAACTCTAT
TGTACTGCTG GCGTTCATCC CCATCACGCC AGTGAATGGC ATTCCCAAAG CGGCGAGACA
CTAAAGCAAC TGGCGAGTGA AAGTCAGGTC GTTGCCGTAG GTGAATGCGG CCTGGATTAC
AACCGGGACT TCTCACCGCG CCCGATGCAA CGACAAGCCT TCACAGAACA ATTGGCCCTT
GCCGTCGAAC TCAAAATGCC TGTACTAATG CATGAACGCG ATGCCCACGC AGATTTCTTA
GCCATAGTGA AAGAGTATCG CAGCGAGCTT ACCGGCGCGC TGCTGCACTG CTTCACCGGG
GACAGAAAGA GCATGGAGTC CTATCTCGAG TTGGATATGC ACCTTGGGAT CACTGGCTGG
GTCTGTGACG AGCGCAGAGG CCTGGAGTTG GCTGAGCTGG TTATCGATAT TCCGGATAAT
CGTATCTTAA TCGAAACCGA CAGTCCTTAC TTGCTGCCAA GAAGTATGCG CCCTAAACCT
AAATCCAGTA AGAATGAACC TCAATATCTT CCCTATATCT CCCGATACAT TGCGAAGCTA
AGAGGTCAGG ACGCCGAGCA ATTCTCTGCA CAGACCTATC AAAATAGTAT CGACTTTTTT
GGGCTAAAGA TTTGA
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| Protein sequence | MSEHIDIAVN LIGSALEKNI DDVIQRAADQ GVSPLIVIGS SLSESEKAIQ CCQQHLNQLY
CTAGVHPHHA SEWHSQSGET LKQLASESQV VAVGECGLDY NRDFSPRPMQ RQAFTEQLAL
AVELKMPVLM HERDAHADFL AIVKEYRSEL TGALLHCFTG DRKSMESYLE LDMHLGITGW
VCDERRGLEL AELVIDIPDN RILIETDSPY LLPRSMRPKP KSSKNEPQYL PYISRYIAKL
RGQDAEQFSA QTYQNSIDFF GLKI
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