| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4082 |
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| Symbol | |
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| ID | 5609935 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4997444 |
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| End bp | 4998811 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640935037 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001475814 |
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| Protein GI | 157377214 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAACC AGCAATCAGT TAATAATAGT TTCGAGCTCA ATGCGACAGG CAATGCGACA
ACCAATGCGA TCACCAGAGC CATGGGCTTT GGTCTGTTTA TCACCTTAGC CGCTGCAATC
TCGCTACCTT CTGCCGCATT TGCGGGCGAA GGACATGACC ATGGTGCCGA AACGGCGGAT
AAAACAGATC TAAAAAATAT CTCACTGGCA ACCGACGATG ACGGACATGA CCATGGAGAG
GAAGAGGGGC ATGATCATGG TGCAGAAGCG ACTGAGAAAG CACAACTCAA CAATATCTCA
TTAGCAAATA CCTCACCAGA AACCGCCGAT GATGGACACG GGCATGGAGA GGAAGCGGAA
GAGGAGGGGC ATGCCCTTGA GCTCACTGCA GAGCAGCAAC AGCTGGCAGG CATTGAGGTT
GCCAGGCTCT CAGAAGAGTC GTTCAGTCTA GAGGCTGTGG CAACGGCTAC CTTAGTAGTC
GACAGAGACA GAACCATGAC TCTGGCGCCT CAGCTGGATG TCAGAATTGA GCAGCGTCAT
GTCGTACCGG GACAAGAGGT GGAAAAAGGG CAGCCCTTGT TGACCTTAGG CGGCGTTGCC
GTGGCGCAGG CGCAGGCCGA ATACATTAAT GCCGCGGCCG AATGGAGTCG TGTTAAGCGT
ATGAGTAAGA GCGCAGTAAG TGCGAGCCGC CGTCTTCAGG CGCAGGTCGA TGCCGAGCTA
AAGCGTGCAA CCCTTGAAGC GATGAAGATG ACCACCTCTC AGATCGGCGC GTTAGAGTCT
AATCCTGAAA CTATCGGTAG CTATCAACTT CTGGCCCCTA TCAATGGGCG CGTTCAGCAA
GATCTTGCCA TGCTGGGTCA GGTTGTGACT TCGGGGACGG CTCTGATGCA GCTCACCGAT
GAGTCACATC TATGGGTCGA AGCTCAGGTC ACGCCAAAGC AGTCTGAGAA CGTGAGTATC
GGCAGCAAGG CTCTGGTTCG GGTCGGGGAT AAAACCTTAG AGGCTAAGAT TATCGGTCGT
TCTCATGAGC TCGATAGTGT GACGCGCACC GAGCAGATTT TGGTGAGTCT TGAAAACCCC
GGCCACGTCA TTCATGCGGG TCAATTTGCT GAGTTATATC TTCCCAATGC AGTGCAAGGG
GGGGTCATTC TTCCCGATGC GGCACTGACG CGTGGTGGCG ATGGTGACTG GCAGGTGTTT
ATTCAAGATG AGGATGGCTT TGAGGCCGTC GAAGTGGAAG TGGTTGAACG TCAGCGCGGC
ATGAACTTAG TTCGTGGTCT GGCTGCGGGC AGTAATGTTG TGGTATCCGG GGCATTCTTT
CTAGCCTCAG AGCAAGCCAA ATCAGGCTTC GATATCCATA ACCACTAA
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| Protein sequence | MKNQQSVNNS FELNATGNAT TNAITRAMGF GLFITLAAAI SLPSAAFAGE GHDHGAETAD
KTDLKNISLA TDDDGHDHGE EEGHDHGAEA TEKAQLNNIS LANTSPETAD DGHGHGEEAE
EEGHALELTA EQQQLAGIEV ARLSEESFSL EAVATATLVV DRDRTMTLAP QLDVRIEQRH
VVPGQEVEKG QPLLTLGGVA VAQAQAEYIN AAAEWSRVKR MSKSAVSASR RLQAQVDAEL
KRATLEAMKM TTSQIGALES NPETIGSYQL LAPINGRVQQ DLAMLGQVVT SGTALMQLTD
ESHLWVEAQV TPKQSENVSI GSKALVRVGD KTLEAKIIGR SHELDSVTRT EQILVSLENP
GHVIHAGQFA ELYLPNAVQG GVILPDAALT RGGDGDWQVF IQDEDGFEAV EVEVVERQRG
MNLVRGLAAG SNVVVSGAFF LASEQAKSGF DIHNH
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