| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4068 |
|---|
| Symbol | |
|---|
| ID | 5610191 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4981206 |
|---|
| End bp | 4982180 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640935023 |
|---|
| Product | diguanylate cyclase with GAF sensor |
|---|
| Protein accession | YP_001475800 |
|---|
| Protein GI | 157377200 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 57 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAAAA ATGCAGGGTT TGAAACAGAA CGTTTTTTAC TGGATACCCC ACACGATCTT
ATCTCTATCG AGAAATGGCA AAAAACGATT AACCTACTAG CCAAACTTTT CGATGCGCCG
GCCGGATTTC TGGTGCAGTA CACCCCCAAT GGCTTTCAAG TTACCATCGC CAGCGAACAA
GACTCTAACC CCTATCCGGC TGGAGGGCTT ATTGAGCCCG ATGCGAATAT ATTTTGCCGT
CGAATTGTCG AGACGCGTAC AGAACTCTAT GTCTCTAACG CAACGATCGA ACCCTGCTGG
GACACCAACC CTGAGGTACG CGATGATGGG TTTACCTCCT ACCTGGGCGT TCCGGTTTTT
TGGCCAAGTG GAGAGGTCTT TGGTACATTT TGTGTGATGG ATTATGAAGA GACAGACTAC
AAAGATACCT ACATTGAATT GATCCATCAT CTAAAAGATA TTCTCGAAGC CGATCTGGCT
ATGTTGGGCC TCTATGAGCA GATGCAGAGG TTGGCCATCA CCGACTCGTT AAGCGGGATC
AACAACCGAC GAGGCTTTCT AGTGCTGGCC GAGCAGCGAA TAAAGCTGGC GAAGCGTACC
GAGAGTCAAC TGGGCTTACT CTATCTCGAT GTCGATGACT TTAAGTTGAT TAACGATGAG
CATGGTCATA GTGTCGGCGA TCTCGTGTTG AAACATATTG CCCGGGTATT GAAAGAGTGT
GTGCGTCAGT CCGATGTGAT TGGGCGAATG GGGGGGGATG AGTTCGTGGC CCTGGTCGTG
ATCGATGATG ACAATGATAT GGATGCCATA CGCAATCGCA TTCTTGATGG GTTTAATCGC
CAAGGCGATG ATTTGACCCT ACCTCTCTTC TCGGCTTCCA TCGGCGATGT AAGGCTTGAA
TTAACCACAG ATTTTGAGAG CCAGCTTGAG GCCGCAGACA AAGATATGCT GCTCCGTAAG
CGAGTGAAAG ATTAG
|
|---|
| Protein sequence | MTKNAGFETE RFLLDTPHDL ISIEKWQKTI NLLAKLFDAP AGFLVQYTPN GFQVTIASEQ
DSNPYPAGGL IEPDANIFCR RIVETRTELY VSNATIEPCW DTNPEVRDDG FTSYLGVPVF
WPSGEVFGTF CVMDYEETDY KDTYIELIHH LKDILEADLA MLGLYEQMQR LAITDSLSGI
NNRRGFLVLA EQRIKLAKRT ESQLGLLYLD VDDFKLINDE HGHSVGDLVL KHIARVLKEC
VRQSDVIGRM GGDEFVALVV IDDDNDMDAI RNRILDGFNR QGDDLTLPLF SASIGDVRLE
LTTDFESQLE AADKDMLLRK RVKD
|
|---|
| |