| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4056 |
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| Symbol | |
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| ID | 5609774 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4966399 |
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| End bp | 4967298 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640935011 |
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| Product | LysR family substrate binding transcriptional regulator |
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| Protein accession | YP_001475788 |
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| Protein GI | 157377188 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 59 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAGTG ATCTGAATCT TGCGGATATA CGTGCCTTTA CCGTGATTGC GAAGCAGGGT
AGCTTTACTC AGGCGGCCGA GGTGCTGGGC TGCTCTCGCT CTCACCTGTC TAAGCAGTTA
TCCCAGTTAG AGCGCTTTCT CGGCGTGAGC CTCATCACCC GCACGACTCG TGCTCAGCGG
CTAACTGAGC AGGGGCAGCA ATTTTTCGAG CAGTGTCAGG CCGCCCTGGA AACCATAGAC
GGTGCGGTGG CGAGTACAGT CGATAATGCC AGGCACCTGC AGGGACAGAT TAATATTAAC
TGCGTCGGCG GGGTTATTGG TGAGGAGATC GTTACCGCCT TAGTGAATGA TTTTATCGCA
CTCTACCCGG ATATCAGTGT TAATCTCGAC TTCAGCAGTC AGCGAGTGGA CCTGGTGGTC
GATGAGTTTG ATCTCGTGTT TCGTATGGGG GAGCTCGAAG ACTCGGGTAT CGTCGCCCGT
AAGCTGATGA GCATAGAAAA TATGACTATG GCCTCACCTC AATATCTCGA ACGTCGTGGA
TATCCTGACC ATCCTAAAGC GCTTAAAGAT CACCTCTGTA TCACAGGCTC TATCGATCAT
TGGTTGTTCG AGCAGGAATC AAACCCCAAC AACAAGGTCG AGGTTGCCAT CAAGGGGGGA
TTTCGGTGTA AGAATGGTCG CGCCATGAAG GCGAGTGCGC TGGCTGGTAA CGGTATCGTG
AGACTGCCTA AACTCTACTG CCCGCAGGAG TTGGCCAGTG GTGAGCTGGT GTCGGTATTT
GAAGAGTGGC GGGTTGCCGA TACACCATTT TATCTGCTTT ACCACAAGGA CAGGTTTCAG
CCCGCCAGGC TAAAGGCCTT CGTCTCTTTC GCGACTCAGC ATTTTATGGA GTACGTCTAA
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| Protein sequence | MNSDLNLADI RAFTVIAKQG SFTQAAEVLG CSRSHLSKQL SQLERFLGVS LITRTTRAQR
LTEQGQQFFE QCQAALETID GAVASTVDNA RHLQGQININ CVGGVIGEEI VTALVNDFIA
LYPDISVNLD FSSQRVDLVV DEFDLVFRMG ELEDSGIVAR KLMSIENMTM ASPQYLERRG
YPDHPKALKD HLCITGSIDH WLFEQESNPN NKVEVAIKGG FRCKNGRAMK ASALAGNGIV
RLPKLYCPQE LASGELVSVF EEWRVADTPF YLLYHKDRFQ PARLKAFVSF ATQHFMEYV
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