| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4019 |
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| Symbol | |
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| ID | 5612507 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4922690 |
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| End bp | 4924114 |
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| Gene Length | 1425 bp |
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| Protein Length | 474 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934974 |
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| Product | SSS family solute/sodium (Na+) symporter |
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| Protein accession | YP_001475751 |
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| Protein GI | 157377151 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4146] Predicted symporter |
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| TIGRFAM ID | [TIGR00813] transporter, SSS family |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000206243 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGGAACAGA TAGTTCAGCT CGCCATATTT TTTGGCTTAA CGGCAACGGT GGGGTTAATC
ACCTACCTCA AGTGCCGCAA TATCAAGCGT GATAACAGCG ACAGCAGAGA CTATTTCCTT
GCCGGCGGAG GATTAAGCTG GGTCGTGGTT GCCGGCTCCC TGATGATGAC CAACATCAGT
GCCGAGCAGA TTGTCGGGAT GAACGGTGCC CAAGCGCTAC TCGTCGCCTG GTGGGAGATA
GCCGCCGCCG TGGGACTGAT CATTCTGGCT AAATGGCTCA TCCCTATCTA TTACAAGTAC
AACTGCACCA CGACCACGGA ACTACTCGAG CGTAAATATA ATGACAAGGG CATTCGCGCC
ATGGTCTCTG TGCTCTTTAT GCTGGGCTAT GCCTTCATAT TACTCCCCGT AGTCCTCTAT
ACCGGTTCGC TGTTTATGAA GTCTATGTTT GGTTTACAGA TACCCGTCAC GCTACTCGCT
ATTATCTTCG CCGTCGTTGG GGCCGTTTAT GCCATCTTCG GTGGTCTTCG AGCGATCGCC
ATCTCCGACA GTTTAAACGG GGTCGGGCTT ATCTTGATGG GCGTCGTGGT CTCATTTCTC
GCCATGAACG CAGTTAATTG GGATCTTTCC GGCGTCCCTA TCGAGCGCAT TACGCTTATT
GGCGACGATC AATCTGATAT TCCCTGGCAC ACACTATTAA CCGGCATGAT CTTCATTCAA
ATATTCTACT GGGGAACCAA TATGGTGATA ACCCAGAGGG CACTGGCAGC AAAGTCGGTG
AAGGAAGCAC AGAAGGGCCT ATATGCCGCG GTTATCATGA AGCTTATCGT TCCCATCATC
GTGGTACTGC CCGGCATCGT CGCCTTCAAG TTATATGGCG ATGTTGGCGA TGTGGCTTAT
GGCAGGTTGG TGGGTGACAT TCTGCCGCCT TGGTTATCCG GCGCCTTCGC TGCCGTGATT
GCGGGGGCCG TATTGAGTTC ATTTAACTCT TGTTTAAACT CGGCTGCTGC ACTGTATACC
TGCGATATTC ACCAAAACTA TGTTAACCCC AATGCCGATG TTCGTAAGAT AGGTACTCGG
GTCGCGCTGG TGTTCACTTT GATATCGGTG GGACTTGTGC CCATTTTCGC TAAATCTGAA
AGTATTATCT CTTTGCTACA ACAGCTTAAC GGCCTCTATT CTATGCCGGT ACTGGCGGCA
TTTATCTGCG CCCTGGTCTT CAAGAATGTA CATGCCAATG CCATCAAGCT AGGCCTTATC
TTCGGCGTGC TGATCTATGC CATCTTTACC TTCATATGGA GCCCATTCCA CTTTATTCAT
ATGATGGCAA TTACCCTTGC AGCTACGATT ACGGTCACCC TGCTACTGAG CAAGTTCGCC
TTTGCACAGC GAACAGATCC ACAATTAGCG ACGGCCGGAA GTTAG
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| Protein sequence | MEQIVQLAIF FGLTATVGLI TYLKCRNIKR DNSDSRDYFL AGGGLSWVVV AGSLMMTNIS
AEQIVGMNGA QALLVAWWEI AAAVGLIILA KWLIPIYYKY NCTTTTELLE RKYNDKGIRA
MVSVLFMLGY AFILLPVVLY TGSLFMKSMF GLQIPVTLLA IIFAVVGAVY AIFGGLRAIA
ISDSLNGVGL ILMGVVVSFL AMNAVNWDLS GVPIERITLI GDDQSDIPWH TLLTGMIFIQ
IFYWGTNMVI TQRALAAKSV KEAQKGLYAA VIMKLIVPII VVLPGIVAFK LYGDVGDVAY
GRLVGDILPP WLSGAFAAVI AGAVLSSFNS CLNSAAALYT CDIHQNYVNP NADVRKIGTR
VALVFTLISV GLVPIFAKSE SIISLLQQLN GLYSMPVLAA FICALVFKNV HANAIKLGLI
FGVLIYAIFT FIWSPFHFIH MMAITLAATI TVTLLLSKFA FAQRTDPQLA TAGS
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