| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3982 |
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| Symbol | |
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| ID | 5614146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4871181 |
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| End bp | 4874261 |
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| Gene Length | 3081 bp |
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| Protein Length | 1026 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934936 |
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| Product | molydopterin dinucleotide-binding region |
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| Protein accession | YP_001475714 |
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| Protein GI | 157377114 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCGTA GAAATTTTTT AAAGGCGGGA TCGGTCGCCG CAGTGATGAC AGCGGGTACA
GCAAGTACCC AAGTTATGAG TTCGGCTAAT AGTAAAACAA GTGATGCAGA TATTAACAGA
TATGCGCCCA CTTCATTAAC GCCAGAGTAT CGCTTCGATG CGGACAATAA GATGATTGAA
AACCAGGATC AGCGCTTCGC GTTTTCCAAG TGTTACGGTT GCTTTAATGT CTGTGGTGCG
CGACTGAGTA TCGATAATAA GACCGACAAG GTGTTACGCG CCGTGGGTAA CCCCTACACC
TTGACCAATA ATGCCGGTCA ACCCATGACA ATGGAAACAT CGCCAAAAGA TGCCATGTTC
CAGCTCTCTG CGGCCAGTGG TCTGAGTCAA AGCAATCGGG CAACCCTTTG TGGTCGTGGT
AATGCGGTTC CCGATGCGTT TGATGATAAA CACCGAATTA CCTCTTGTAT GAAACGGGTC
GGTAATCGTG GTGAAAACAG GTGGCAAACG ATTTCGTATG AACAATTGCT GCAAGAGGTC
GTTGATGGAG GCGATCTCTT CGGTGAGGGT CATGTCGAAG GTTTAAAGGC TATTCACGCT
AACCCGGCAT TAGCCAATCC GGCTTACCCT GATTTTGGTC CGGTAAAAAA TCAGTTACTG
GTTTCAACGT CATCCGAACA AGGGGCGCGG GCCGATTTCA TGCACCGTTT TGTCTCTGAT
GCCTGGGGAA CCCCCAATAT CGGTACCAAG GATTCCTACT GCGGTCACCA ACAGGTTGCG
GGCTGTGCCT TGGGTTGCTT CGACGCTGTC GATGAGATGG CGCTGCCTCA AGTCGATTAT
GAGGAGTCAA AGTTTGCTAT TTTCATCGGC ACGAACCCAG GTACCAGTGG TAATGGTTTG
AATGTAGGCT CTCGTCGTTT ATCCAAGGCG CGTAGCGATC GTACTGATTT TAAATATGTG
GTCATCGATC CTATTCTGCG CTCATTGACC TCGGAAACCG ATACGACAAA TGGTGAGTGG
CTACCGATCA AATCCGGTGG CGACACTGCG TTAATGTTCG CTATGCTGCA GTACATCATA
AATCATGAGC GGTACCGCAG GCCTTATCTG GAGGCGCCTA GCCAGGCAAG CGCCGATGCC
GTTGGTGAGA TGAACTACAC CAACGCCACC TATCTAGTGG TCAAAGATAA AACACACCCT
CTTTATAACC AGTTCCTGAC TGCCGAAGCC TGTGGATTAG GCGACGCAGA AGTGAAGATG
GTGATAGATA AACAAACCGG CCAACTGGTC ACGGGCGATA GTGAGCAGGC GGCGCAGTTA
TTCTATAAAG AGAGCGTAAC CCTGGGTGAT GGCTCACAGG TACAGGTTGA AACGGCTTTC
TCGCTGCTAA AGCAGCGCGT CAACAGTCAC TCCATGCAAG ATCTGTCGAA GCGCTGTGAG
ATCCCGGTCG CCAAGATTGA GGAGCTGGCC AAAGAGTTTA CCTCTCATGG TCGCAGTGTC
TCTATTGAAA CCAATACCGG CTGTAACGCT ACCGATGGCG GTCAGTTTGC CTTTGCGATG
ATTATGCTGG CGACTATGGT CGGCGCGCAC AATGCCAAGG GCGGTATGAT GCATATGGGC
GGCGTGGGCT ATGCCAGCAT GTATGACATC TATGACGGCC CGCTGTATAA CTTGATGGAC
TTTGAACACA CAGAGGTGGT CGGATTTAAT GCCGAGCGTT CCGGTGATTA TGAACAGAGC
CATGAGTATC AGCAGAAAGT GGCGCAAGGG CTGAACCCAT ATCCGGCAAA TGAGGCATGG
AACAACACTT TTGTGCAAGA TAATAGTGGC GAGTTGCTCG TCGCCCATGC CAATAAAAAC
CCGTTCAACT TCAAGGCGTG GATCACCTGG TCTACCAACC CAATTTACGG TTGCTCAGGT
CTGCAAGATC AGGTTGAAGA CTCCATCAAA GATCCTAAGC AGCTGGGCTT GATCATTGCA
CTCGATCCCT ACATCAACGA AACCAATGTT TTTGCGGACT ATATCGTTCC GGATACGCTG
CAATATGAGG CATGGGCAAA CTCACGCATG TGGGGCAGCG AATATATTGG CGATGTGGCT
TGTGTGCCAG TTGTCGAGTC CCGGACGGCT AAAACGGCCA ATGGTGATCA CGTCAATATG
GAGCAGTTCA TCATCGACGT CAGTAAAGCG ATCGGTTTAA AGGGGTTTGG TGATAACGCA
TTTAAAGATC TGCAGGGTAA GCCGCATTCC CTCAATAGCC CGGCTGACTT CTATGTGCCT
CTGTTTGCTA ACATCGCCCA CACTGGTACG GTGTTACCCA CACCGACAGA GGAGGATATT
AAGTTCACCA GTGTCGACCG AGCCTTGCCT ATGTTTGAGG CGCGTCTGAA GCCGCAAGAG
CTTGGGCCTA CGGCATACAT GTTGACCCGT GGTGGACGTT TTGAACGTGT CGATGAGCGC
TATGAGGGTG AGTTCTTCAA CGCGGCGATG CGTATGGATA CTCAGTTCCA GATCTATAAC
GAATCATTAG CCAGAGTAAA AGATTCATTT ACAGGCGAAT GTAATGATGG TCTGCCTGTG
TATGATGTTG ACCGTTTCTG GGATGGCAGC GCGGTTCGAG AACACTGGAA TGAGAAAGAC
TATCCGTTTA ACTTCTCCAC TTTTAAGTTG CACCTACGTA GCCCTTATTC AGTCTCTCTG
CCTCGCATCA CAGCATTAGG AGATACAAAC TATATTCAGT TACATCAGGA TGATGCAGCT
AAATATAACC TGAAATCCGG TGATAAGGCT CAGGTTCTTT CACCTAAGGG CAAATACTTA
GAGGGAATAG TTCAGGCGGA TAAAACGGTT GCCTTGGGCA CTATCGTAGT TGGTATGGGT
TATGGCCATA CCGCATTCGG TGCCAGTGCC GTAGAGGTGG ATGGTACGGT GCGTCCGGGG
ATCAAAGAGC GCGGTACCGG TATCTGTCCC AATGCGTTCA ACGTAGTCGA CCCAACCCGT
AAGGGAGCGA GTCTTTATCG TGACAGAACC TTCGGTTCGA CGGCGAGGCA CGGTGTGCCT
GTAGGGATCA AGAAGGTATA G
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| Protein sequence | MDRRNFLKAG SVAAVMTAGT ASTQVMSSAN SKTSDADINR YAPTSLTPEY RFDADNKMIE
NQDQRFAFSK CYGCFNVCGA RLSIDNKTDK VLRAVGNPYT LTNNAGQPMT METSPKDAMF
QLSAASGLSQ SNRATLCGRG NAVPDAFDDK HRITSCMKRV GNRGENRWQT ISYEQLLQEV
VDGGDLFGEG HVEGLKAIHA NPALANPAYP DFGPVKNQLL VSTSSEQGAR ADFMHRFVSD
AWGTPNIGTK DSYCGHQQVA GCALGCFDAV DEMALPQVDY EESKFAIFIG TNPGTSGNGL
NVGSRRLSKA RSDRTDFKYV VIDPILRSLT SETDTTNGEW LPIKSGGDTA LMFAMLQYII
NHERYRRPYL EAPSQASADA VGEMNYTNAT YLVVKDKTHP LYNQFLTAEA CGLGDAEVKM
VIDKQTGQLV TGDSEQAAQL FYKESVTLGD GSQVQVETAF SLLKQRVNSH SMQDLSKRCE
IPVAKIEELA KEFTSHGRSV SIETNTGCNA TDGGQFAFAM IMLATMVGAH NAKGGMMHMG
GVGYASMYDI YDGPLYNLMD FEHTEVVGFN AERSGDYEQS HEYQQKVAQG LNPYPANEAW
NNTFVQDNSG ELLVAHANKN PFNFKAWITW STNPIYGCSG LQDQVEDSIK DPKQLGLIIA
LDPYINETNV FADYIVPDTL QYEAWANSRM WGSEYIGDVA CVPVVESRTA KTANGDHVNM
EQFIIDVSKA IGLKGFGDNA FKDLQGKPHS LNSPADFYVP LFANIAHTGT VLPTPTEEDI
KFTSVDRALP MFEARLKPQE LGPTAYMLTR GGRFERVDER YEGEFFNAAM RMDTQFQIYN
ESLARVKDSF TGECNDGLPV YDVDRFWDGS AVREHWNEKD YPFNFSTFKL HLRSPYSVSL
PRITALGDTN YIQLHQDDAA KYNLKSGDKA QVLSPKGKYL EGIVQADKTV ALGTIVVGMG
YGHTAFGASA VEVDGTVRPG IKERGTGICP NAFNVVDPTR KGASLYRDRT FGSTARHGVP
VGIKKV
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