| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3980 |
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| Symbol | |
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| ID | 5610421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4868650 |
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| End bp | 4869822 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934934 |
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| Product | peptidase M50 |
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| Protein accession | YP_001475712 |
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| Protein GI | 157377112 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1994] Zn-dependent proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGTTG AAGTTAAGAG ATTATTTGTG GAACTACTGA GAATTGATTG TTTGGGAAAG
GAGCTGAGAC TGGAAGGCTC TATGGCTGGC TGGCAACAGC TTTTTTGGGG AGACACCTTA
GTATCGGTCA AACAGGCCAG TGCCGATAAT GAAGGACTTA GAATCCACAA TTTTGAGCTT
ACCAGCCAAG TTCAACAACA CAAAACACCA CCTGAGTCTG AAGCAACGCC TCTGGATGAT
GAATATGTGA CTTCAACCAG CATTAAGGTA AGCTTAGAGA TCGACCTGAT GTGGCAACCT
TTTAACATCG ATTATCGACT CATTAAAGAT GAGTCCGTTA TCGCAAAAGG GAGCCGAAAC
AGTAAAGATA TCGAACGTCA GGTTCCGGTA AAGCCAGTTC AAACGAAAAA ACAGTTCAGC
TTAGTCGGAC TGGCGTCCCT TGGCTTTAAG TTACTCAAGA GTGCCAAAGT CATTAAGGTG
GTACTCGCCG GCGCCAGCAT CGCAGCTTAC TCCTGGCTAT TTTCTTTCCA GTTTGCACTC
GCACTTATCG CTTGTCTGGT GTTTCATGAA TATGGTCATA TTCGTGCGAT GAAGCACTTT
GGAATGAAAA CGAAAGGGAT CTACCTCATC CCGTTTATGG GAGGCTTAGC CCTCAGTGAT
GAGAAGATCA ATACCCGATG GCAAGATGTG GTGATCTCGA TAATGGGACC GACTTTTGGT
TTAATTATGT CACTGCTCTC ATTAGTCGCT TACTGGTTAA CCGGTAACGT ATTTTTTGCC
GGACTCGCCG CATTCAATGC GCTATTAAAC CTATTTAACC TGCTGCCCAT TCTCCCTCTC
GACGGCGGCC ATATACTCAA GAGTATCAGC TTCTCCATGA ACAGCATCCT GGGACTCGGG
GCCTGCATCG CGGGAGCCGC TATCGGTGTA TACCTTAGTT ATACTCTGGG CTTAGCGCTA
TTAGGTTTCT TACTGCTCAT TGGTAGTTTA GAGATCGTTT TTGAGTGGAA AACACGTCAC
CAGAGCCACC TCTTACCTTT AGATAGATAT GGGCAGATAT TCTCAACTCT ATGGTACTTC
CTAACGGTAG GGGCTTTGAT AGCAATCATC TGGTACCTGG CAGGTTCGGG TGACGATATG
CTGGGCTTAC CATTGAAAAT CTTGCAGAGC TAA
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| Protein sequence | MPVEVKRLFV ELLRIDCLGK ELRLEGSMAG WQQLFWGDTL VSVKQASADN EGLRIHNFEL
TSQVQQHKTP PESEATPLDD EYVTSTSIKV SLEIDLMWQP FNIDYRLIKD ESVIAKGSRN
SKDIERQVPV KPVQTKKQFS LVGLASLGFK LLKSAKVIKV VLAGASIAAY SWLFSFQFAL
ALIACLVFHE YGHIRAMKHF GMKTKGIYLI PFMGGLALSD EKINTRWQDV VISIMGPTFG
LIMSLLSLVA YWLTGNVFFA GLAAFNALLN LFNLLPILPL DGGHILKSIS FSMNSILGLG
ACIAGAAIGV YLSYTLGLAL LGFLLLIGSL EIVFEWKTRH QSHLLPLDRY GQIFSTLWYF
LTVGALIAII WYLAGSGDDM LGLPLKILQS
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