Gene Ssed_3974 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_3974 
Symbol 
ID5613976 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp4859659 
End bp4861032 
Gene Length1374 bp 
Protein Length457 aa 
Translation table11 
GC content48% 
IMG OID640934928 
Productalkaline phosphatase 
Protein accessionYP_001475706 
Protein GI157377106 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1785] Alkaline phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACCTA CATTATTCAG TTTAAAACGT TCTCTACTCA CCGTGGCGGT ATTGTTCACC 
ACCACGGTGT CGGCTTTTGT GTATGCCGAT ACCCCAATTC ATCCCATGAT GGGCGACGCT
CCCAGCGTCC CTAAAAATAT CGTGATCTTA ATTGGTGACG GTATGGGGCC AGCCTACACC
AGTGCGTATA GATACTATAA AGACAACCCT GAAACACAAG AGATTGAGCA GACGGTATTC
GATCGACTCC TAGTCGGAAC GGCCAGCACT TATCCGGCCC GCGTCAGCGG TTACGTGACA
GACTCTGCGG CATCTGCGAC AGCCTTAGCG ACGGGAGTAA AATCTTACAA TGGGGCGATA
TCGGTCGATA CCGACAAACA AACCCTGCCC ACTATCATGG AGATGGCGAA AAAACAGGGG
CTGTCTACCG GAGTCGCGGT GACTTCTCAG ATAAATCATG CCACTCCCGC TGCGTTTCTT
ACCCATAATG AGAGCCGCAA AAATTATGAT GAGATAGCCA ACAGCTACTT AAATACAGAT
GCGGATGTCA TGTTAGGCGG GGGACAAAAG TTCTTCCCGG CTGAACTTAT CAGCCAATTT
GAGGCTAAGG GTTACCGGTA CCTGTCAGAT TTCTCTCAAT TGGATTCTGT CACTGAGCCC
AAGGTAATTG GCCTGTTTGC CGAAGTGCAA CTGCCTTGGG CCATCGATGA AGTTGGTGCC
CACAAACTCA GTAAGATGAC GGCCAAGGCA CTGGAATTAC TTTCTCAGAA TGAAAAGGGC
TTCGTATTAT TGGTCGAGGG CAGCTTAATC GATTGGGCCG GACACAATAA TGATATAGCA
ACCGCAATGG CCGAGATGGA CGAATTCGCC AATGCGTTAG AGGTCGTTGA ACAGTACGTT
CGACAAAACA ATGATACCTT GATGATAGCT ACTGCCGATC ACAACACCGG AGGCCTGAGC
ATCGGCGCCA ATGGTGAGTA CAGCTGGAAG ACAGACATTA TCAGAGCAGT AAAATCGAGC
CCGGCAAGCA TTGCCGCAAA CGCAATTAGC AGTGAGAACT GGCAAGATGA GGTTATCTCT
AAGCTGACAT TTGAACTCAG CATTGATGAG CTCACACAAC TGTCACGTGC ACGCATGCAG
GGTCAAGATG TGATGGTAAC GGCTATCAAG AAGCTTATCG ATAATCGCTC AAATACAGGC
TGGACAACGG GTGGTCATAC GGGAATGGAT GTACAGGTGT TTGCATCGGG TCCGGCATCT
AAACTCTTTA GCGGTTATCA GGACAATACA GATATTGCGT TAAAGATAAT GAGCTTGCTT
CCTAAGAAAG CTAAGAGTCC AGCTACAACG ACGCAGGTGC AAAGCAACAA ATAA
 
Protein sequence
MRPTLFSLKR SLLTVAVLFT TTVSAFVYAD TPIHPMMGDA PSVPKNIVIL IGDGMGPAYT 
SAYRYYKDNP ETQEIEQTVF DRLLVGTAST YPARVSGYVT DSAASATALA TGVKSYNGAI
SVDTDKQTLP TIMEMAKKQG LSTGVAVTSQ INHATPAAFL THNESRKNYD EIANSYLNTD
ADVMLGGGQK FFPAELISQF EAKGYRYLSD FSQLDSVTEP KVIGLFAEVQ LPWAIDEVGA
HKLSKMTAKA LELLSQNEKG FVLLVEGSLI DWAGHNNDIA TAMAEMDEFA NALEVVEQYV
RQNNDTLMIA TADHNTGGLS IGANGEYSWK TDIIRAVKSS PASIAANAIS SENWQDEVIS
KLTFELSIDE LTQLSRARMQ GQDVMVTAIK KLIDNRSNTG WTTGGHTGMD VQVFASGPAS
KLFSGYQDNT DIALKIMSLL PKKAKSPATT TQVQSNK