| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3974 |
|---|
| Symbol | |
|---|
| ID | 5613976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4859659 |
|---|
| End bp | 4861032 |
|---|
| Gene Length | 1374 bp |
|---|
| Protein Length | 457 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640934928 |
|---|
| Product | alkaline phosphatase |
|---|
| Protein accession | YP_001475706 |
|---|
| Protein GI | 157377106 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1785] Alkaline phosphatase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCTA CATTATTCAG TTTAAAACGT TCTCTACTCA CCGTGGCGGT ATTGTTCACC
ACCACGGTGT CGGCTTTTGT GTATGCCGAT ACCCCAATTC ATCCCATGAT GGGCGACGCT
CCCAGCGTCC CTAAAAATAT CGTGATCTTA ATTGGTGACG GTATGGGGCC AGCCTACACC
AGTGCGTATA GATACTATAA AGACAACCCT GAAACACAAG AGATTGAGCA GACGGTATTC
GATCGACTCC TAGTCGGAAC GGCCAGCACT TATCCGGCCC GCGTCAGCGG TTACGTGACA
GACTCTGCGG CATCTGCGAC AGCCTTAGCG ACGGGAGTAA AATCTTACAA TGGGGCGATA
TCGGTCGATA CCGACAAACA AACCCTGCCC ACTATCATGG AGATGGCGAA AAAACAGGGG
CTGTCTACCG GAGTCGCGGT GACTTCTCAG ATAAATCATG CCACTCCCGC TGCGTTTCTT
ACCCATAATG AGAGCCGCAA AAATTATGAT GAGATAGCCA ACAGCTACTT AAATACAGAT
GCGGATGTCA TGTTAGGCGG GGGACAAAAG TTCTTCCCGG CTGAACTTAT CAGCCAATTT
GAGGCTAAGG GTTACCGGTA CCTGTCAGAT TTCTCTCAAT TGGATTCTGT CACTGAGCCC
AAGGTAATTG GCCTGTTTGC CGAAGTGCAA CTGCCTTGGG CCATCGATGA AGTTGGTGCC
CACAAACTCA GTAAGATGAC GGCCAAGGCA CTGGAATTAC TTTCTCAGAA TGAAAAGGGC
TTCGTATTAT TGGTCGAGGG CAGCTTAATC GATTGGGCCG GACACAATAA TGATATAGCA
ACCGCAATGG CCGAGATGGA CGAATTCGCC AATGCGTTAG AGGTCGTTGA ACAGTACGTT
CGACAAAACA ATGATACCTT GATGATAGCT ACTGCCGATC ACAACACCGG AGGCCTGAGC
ATCGGCGCCA ATGGTGAGTA CAGCTGGAAG ACAGACATTA TCAGAGCAGT AAAATCGAGC
CCGGCAAGCA TTGCCGCAAA CGCAATTAGC AGTGAGAACT GGCAAGATGA GGTTATCTCT
AAGCTGACAT TTGAACTCAG CATTGATGAG CTCACACAAC TGTCACGTGC ACGCATGCAG
GGTCAAGATG TGATGGTAAC GGCTATCAAG AAGCTTATCG ATAATCGCTC AAATACAGGC
TGGACAACGG GTGGTCATAC GGGAATGGAT GTACAGGTGT TTGCATCGGG TCCGGCATCT
AAACTCTTTA GCGGTTATCA GGACAATACA GATATTGCGT TAAAGATAAT GAGCTTGCTT
CCTAAGAAAG CTAAGAGTCC AGCTACAACG ACGCAGGTGC AAAGCAACAA ATAA
|
|---|
| Protein sequence | MRPTLFSLKR SLLTVAVLFT TTVSAFVYAD TPIHPMMGDA PSVPKNIVIL IGDGMGPAYT
SAYRYYKDNP ETQEIEQTVF DRLLVGTAST YPARVSGYVT DSAASATALA TGVKSYNGAI
SVDTDKQTLP TIMEMAKKQG LSTGVAVTSQ INHATPAAFL THNESRKNYD EIANSYLNTD
ADVMLGGGQK FFPAELISQF EAKGYRYLSD FSQLDSVTEP KVIGLFAEVQ LPWAIDEVGA
HKLSKMTAKA LELLSQNEKG FVLLVEGSLI DWAGHNNDIA TAMAEMDEFA NALEVVEQYV
RQNNDTLMIA TADHNTGGLS IGANGEYSWK TDIIRAVKSS PASIAANAIS SENWQDEVIS
KLTFELSIDE LTQLSRARMQ GQDVMVTAIK KLIDNRSNTG WTTGGHTGMD VQVFASGPAS
KLFSGYQDNT DIALKIMSLL PKKAKSPATT TQVQSNK
|
|---|
| |