Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_3969 |
Symbol | |
ID | 5614206 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | + |
Start bp | 4855081 |
End bp | 4856253 |
Gene Length | 1173 bp |
Protein Length | 390 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640934923 |
Product | hypothetical protein |
Protein accession | YP_001475701 |
Protein GI | 157377101 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG2039] Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTAAAT CCGTGATGGC GATTGCAGCT GTAGGCGCTC TGGCCTTTAG CATCGCCTGT TCAGCCACCC CTGATGCTAT GACCCCCCTG AATATTGAAG AGCTGAGACT CGAAGCAGCA AACCAGACGA TACCCGATGT TGTCACTCGC TATCAGGCCT TAGTTGAGAG CCTGGACAAT AAATACCAGC AGCAAACAGA CGAGCTTGAA ATGACCAAGA TGGTCGCACG TCAGGGTGAA AGGTTATGGC AACAAGCCGT TAGAGACATA CAATCAGGCA GTATCGATGA CAGGCCGCTC TACTGGAGTC GCCTCGCCAT GCAGCGTCAA TTGAAGCGCA GTCGCCCCGC ATTTAACATG GCCTCCTGGC AGCAAGAGGT TTTACTGAGC GCCGTTGAAA AATCTTCCAG AGGCTTTAGC AATGTGCAAT TCTCGAATGA CACCGAGGTA AAGATACTGC TAACAGGTTT CGATCCCTTC TTCCTCGATC GTAATGTCGG CCAGAGTAAC CCCTCGGGCT TAGTTGCCTT GTCCTTAGAT GGTTTTGAAT TTTCCGCTAA CGGCAAGAAA GCACAGATTG AAACTGTGAT GATACCCGTT CGTTTTGCCG ATTTTGATGA GGGAATAATA GAGTCACTAC TGACTCCTGT TTACCGTGAA AACAGTGTAG ATATGATTAT TACTGTCAGC ATGGGCCGTG ATGATTTCGA TCTGGAGCGC TTCCCGGGTC GAAACCGAAG TGCTGCCGCT CCCGATAATT TGAACCTGCT CACAGGTGCA AATAAGCAAA AGCCAATGGC ACCTTTGTTT AATCGTAAAA CATTAAACGG CCCGGAATTT GTCGAGTTCT CTCTCCCTGT GGCGGCGATG CAATCGGTAA GTGGTAATTG GAAAGTAAAT GATAACCATA AGGTTACTTC GGTTGCTAAA GGTGAGTTTA CCGCTTCAAC GCTATCTGAA CTTCAAAGCG AAACTTCGGT TGAAGGCTCA GGTGGAGGCT ACCTTTCCAA TGAAATATCT TACCGTGCGG TACTGCTGGG GCAACAGTTT AATAGCAGTA TTGCAGTCGG ACACATACAT ACCCCCAGAG TTTCAGGCCA CGACCCGAAA GTTGAAGCCG AGATCATGGC GCAGGTTAAA GCTATGGTCA TAGCAGGCGC CGCTGCTCTA TAA
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Protein sequence | MTKSVMAIAA VGALAFSIAC SATPDAMTPL NIEELRLEAA NQTIPDVVTR YQALVESLDN KYQQQTDELE MTKMVARQGE RLWQQAVRDI QSGSIDDRPL YWSRLAMQRQ LKRSRPAFNM ASWQQEVLLS AVEKSSRGFS NVQFSNDTEV KILLTGFDPF FLDRNVGQSN PSGLVALSLD GFEFSANGKK AQIETVMIPV RFADFDEGII ESLLTPVYRE NSVDMIITVS MGRDDFDLER FPGRNRSAAA PDNLNLLTGA NKQKPMAPLF NRKTLNGPEF VEFSLPVAAM QSVSGNWKVN DNHKVTSVAK GEFTASTLSE LQSETSVEGS GGGYLSNEIS YRAVLLGQQF NSSIAVGHIH TPRVSGHDPK VEAEIMAQVK AMVIAGAAAL
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