| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3964 |
|---|
| Symbol | |
|---|
| ID | 5613748 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4845402 |
|---|
| End bp | 4846610 |
|---|
| Gene Length | 1209 bp |
|---|
| Protein Length | 402 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 640934918 |
|---|
| Product | sodium/hydrogen exchanger |
|---|
| Protein accession | YP_001475696 |
|---|
| Protein GI | 157377096 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0770173 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0859803 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCCAATAG ACAGCTTTGT CATCTCAATA TTTCTCATGC TCACCTTCGG GCGTCTGCTC
AGTGAGCTCT GCTGCCGTGT GGGAGTCCCT GGGGTGGTTG GCGAGATGTT AGCAGGGCTC
ATTATCGGTC CCTCGATTCT GGGATGGGTT CATCCCCACA ACACCCTCTC CGTTCTGGCG
GAGCTGGGGG TGATTCTGCT ACTGTTCGAT ATTGGCTGTG AGACCTCAGT AAAACGCCTC
TACCACGCCA GTGGCAGATC GATCTGGGTT GCACTAGGTG GAATCATTTA CCCCGTAGTC
ATAGGGGGAG CTTCAGCCGC CTACTGGCTT AATTTACCTC CATTTACGGC TCTGTTCTTT
GGCTGCGCCT TAACGGCAAC CAGTATCGGC ATCTCGATTA GGGTGATGAC TCAGGCTAAG
CAAGGCCAAA CACTTGCCGG TCAGGTTATT CTCGGTGCCG CGGTGGTCGA TGATATTGTT
GGTGTGGTAT TGCTGAGCGT ACTGTTAAAC TTTAACGCTT CTGGCACCCT GAGTCTGGTA
TCTGTATTGA TACTGGTCAT GAAGGTCGTT GGCTTTGTGT TCCTGGCACC TCCCATGGCC
AGAATGCTTA TCTATCTATT CAGAAGCTGG TACCCTCACT CTAAGAGCAG CGGCTTTGAG
GTCTTCGTGG TGATAACCTT AATCTGCCTG TTCGCCTGGC TGGCACACTG GGTCGGAGCG
CCGGCACTGC TCGGGGGCTT CGCTGCCGGA ATGGCACTAT CCCGCCAATT TGTTTTCCCG
ACAAACCGAT ATTTGCCTAA CCCCTTTCCT TTCACCCACA AGTTAGAGGT ATCGGCCAAA
CCCCTCGTAG ATCTCTTCTC CCCCATATTT TTTGTCTACG TAGGGATAAG TGTCGACCTT
AGCCAGTTGG ATTTCACTGT ATCGGGCCTG GTGGTGCTTC TCTGGCTGGC ACTCATCGCT
ATCGTCACTA AGCTGGCCTC CGGGATGGCC GCAAAGGGTC CCTTGCGGAG AAAAATTATC
ATAGGAAGCG CGATGATCCC CCGGGGAGAG GTCGGGTTAG TATTTGCCGA AATGGGGCTG
CAGCTGGGCA TCATTCAACC TAAGTTATTT ACTGAGATGG TATTGATCAT CGCCATCTCG
AGCATCGTTG GTCCCATGCT CCTCAAGTGG TCCCTCAAGG GGCAAACGGT ATTACACAAA
AAGCCGTGA
|
|---|
| Protein sequence | MPIDSFVISI FLMLTFGRLL SELCCRVGVP GVVGEMLAGL IIGPSILGWV HPHNTLSVLA
ELGVILLLFD IGCETSVKRL YHASGRSIWV ALGGIIYPVV IGGASAAYWL NLPPFTALFF
GCALTATSIG ISIRVMTQAK QGQTLAGQVI LGAAVVDDIV GVVLLSVLLN FNASGTLSLV
SVLILVMKVV GFVFLAPPMA RMLIYLFRSW YPHSKSSGFE VFVVITLICL FAWLAHWVGA
PALLGGFAAG MALSRQFVFP TNRYLPNPFP FTHKLEVSAK PLVDLFSPIF FVYVGISVDL
SQLDFTVSGL VVLLWLALIA IVTKLASGMA AKGPLRRKII IGSAMIPRGE VGLVFAEMGL
QLGIIQPKLF TEMVLIIAIS SIVGPMLLKW SLKGQTVLHK KP
|
|---|
| |