| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3953 |
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| Symbol | |
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| ID | 5612818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4830710 |
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| End bp | 4831378 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934907 |
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| Product | ABC transporter-related protein |
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| Protein accession | YP_001475685 |
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| Protein GI | 157377085 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1136] ABC-type antimicrobial peptide transport system, ATPase component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.245664 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAGC AGATTGTTCA ACTCAAAGGG GTTAGCAAAG AGTTTATCGA TGGCGGGCAA
CACCACCGGG TGCTCGATAA CCTCGACCTG ACGCTGAGCA GGGGCGAGAC CATAGCCCTC
ACCGGTGCCA GTGGTAGCGG CAAGAGTACC CTACTCAACC TGATAGCAGG TTTCGAATAT
CCCAACTCGG GTGAACTGAT TTTACTCGAT GACAATACGG CAGCATGGAA AGACCATCGC
TGGAGTCAAT TTCGTCATCA ACAACTGGGT GTCGTGTTCC AGCAATTTAA CCTTCTAACA
CCGCTTAACG TCAGAGATAA CATCGCCTTC CCCTTAAGGA TGAACCGTAA ACCCTGGAGC
CCTTGGTGCG ATAACCTCGT CGATTGTTTG GGGTTAACTT CTCTACTGAA TCGACACGTC
GATGCCCTAT CCGGTGGTCA ACAGCAACGT GTTGCTATCG CCAGAGCCCT GGCCCACCAA
CCCGCACTAC TGCTAGCCGA TGAGCCCACG GGAAATCTGG ATCAGAGCGC CAGCCAGGAG
GTGATGTCAC TGCTAAAAAC CTTAGCGAGC GAACAGCAAA CCACAGTGCT CATGGTCACC
CACTCTCTCG AGTGCGCCAG TTTCATGGAG AGACGCTGGC ATCTGGAGTT GGGACGTATC
CATGAATAG
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| Protein sequence | MTEQIVQLKG VSKEFIDGGQ HHRVLDNLDL TLSRGETIAL TGASGSGKST LLNLIAGFEY
PNSGELILLD DNTAAWKDHR WSQFRHQQLG VVFQQFNLLT PLNVRDNIAF PLRMNRKPWS
PWCDNLVDCL GLTSLLNRHV DALSGGQQQR VAIARALAHQ PALLLADEPT GNLDQSASQE
VMSLLKTLAS EQQTTVLMVT HSLECASFME RRWHLELGRI HE
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