| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3942 |
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| Symbol | |
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| ID | 5612978 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4815199 |
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| End bp | 4815636 |
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| Gene Length | 438 bp |
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| Protein Length | 145 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934896 |
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| Product | hypothetical protein |
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| Protein accession | YP_001475674 |
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| Protein GI | 157377074 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2050] Uncharacterized protein, possibly involved in aromatic compounds catabolism |
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| TIGRFAM ID | [TIGR00369] uncharacterized domain 1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.196603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCGATTT GGTTCAGAGC GGTAACCTTG GAAGATTGCG CCAAGATGGA TGAGGGAATG
CATGGTAAAG GCACCTTGAT GAAGACCTTG GGCATTCAGA TTTCAGAGAT TGGTGATGAT
TATATGAAGG CGACTATGCC AGCGTCTCCC GACGTTCATA ATCCTCTGGG TATCGTTCAT
GGTGGAGCCA ATGTGGTACT AGCCGAGACT GTTGCCAGCT ATGCGGCGAA TTTTGTGGTC
GACTATGAGC AGTTCTACTG CGTTGGCCAG GAGATTAATG CCAACCACCT TAAAGCCTCC
CGTAATGGTA TCTTAACGGC GACGGCCAAA CCGGTCCACC TGGGTAAGAG AAGCTCCGTT
TGGGAGGTGT TAATTCATAA TGGAGCGGGT CAGTTATGTT GCATCTCGAG GATGACGGCC
GCAGTAGTGG CGCGCTAG
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| Protein sequence | MSIWFRAVTL EDCAKMDEGM HGKGTLMKTL GIQISEIGDD YMKATMPASP DVHNPLGIVH
GGANVVLAET VASYAANFVV DYEQFYCVGQ EINANHLKAS RNGILTATAK PVHLGKRSSV
WEVLIHNGAG QLCCISRMTA AVVAR
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