| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3930 |
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| Symbol | |
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| ID | 5612583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4801077 |
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| End bp | 4802021 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934884 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475662 |
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| Protein GI | 157377062 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAAGC ATTCGATCAT TCCAAAAGCC ATTACCGAGT ATGACCTGCG TCTTCTGCGT
ATATTTCGAA CCGTTGTCGA AAATGGAGGC TTCTCGGCAT CCGAAGCCGA GCTGGGTGTC
ACGCGCTCGA CCATCAGCGT GCACATGTCT AACCTTGAGA GCCGCATGAA GCTCAAACTC
TGCAGCCGCG GACGTGGTGG ATTTGCCTTA ACCGAAGATG GACAGGCCGT CTATCATGCC
TGCATAGAGC TGTTTGACTC ACTCAACGAC TTTTCACTCT TGGTCAATGG CTTAGGTAAA
GAGCTGAGTG GTGAATTGAT TCTGCTCTGT GCCGATCAGC TCGACAGTAC CATGCAGCAG
AAGCTTGCTC AGGTTATCCA GTATCTGCAC ATCAAAGAGC CGCAGCTGCA CCTGATCTTA
GACGGTGAAG CCATTCACAA TATCGAGCGA GCCTTATTGC AGGATAAGGC ACATGTCGGC
TTGCTACCCA GCTATCAGCA GATCGAAGGC CTGAGCTACC AGACTATCTT CAGTGAACCT
ATTTATCTGT GTTGCAGTAG CAATCACCCC TATTTCAAAC TGAACGATGA AGAGATCACT
CCCGAGATGT TAGCCCAGTC CCCATCCATA CACCCGGGGA TAGATATCGA CTCTGAGGGG
CGTGAGCAGT TGAAGAAACT TAATCTCTCG GCAAAAGCGT ACAAGTTTGA TACCAGAAAG
ACCCTGATAC TCTCCGGCTG CTATATCGGC TACCTGCCAC AGAGTTATAT CCAAGCAGAG
CTGGAGTCGG AGCAGATGAG GATCATCCAC TCAGACTCGG CCAGTTATCA ATTTAACCTA
TCGATGGTGT TTAAGAAGAG CCCGCGGGAA ACCAGCAAAG TAGAGCTACT GAAAGCCGCG
TTCGAAGAGG TTTTCCACTT GAAACCAACG GGAAACTCGA GATAG
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| Protein sequence | MAKHSIIPKA ITEYDLRLLR IFRTVVENGG FSASEAELGV TRSTISVHMS NLESRMKLKL
CSRGRGGFAL TEDGQAVYHA CIELFDSLND FSLLVNGLGK ELSGELILLC ADQLDSTMQQ
KLAQVIQYLH IKEPQLHLIL DGEAIHNIER ALLQDKAHVG LLPSYQQIEG LSYQTIFSEP
IYLCCSSNHP YFKLNDEEIT PEMLAQSPSI HPGIDIDSEG REQLKKLNLS AKAYKFDTRK
TLILSGCYIG YLPQSYIQAE LESEQMRIIH SDSASYQFNL SMVFKKSPRE TSKVELLKAA
FEEVFHLKPT GNSR
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