| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3929 |
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| Symbol | |
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| ID | 5612582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4799466 |
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| End bp | 4800935 |
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| Gene Length | 1470 bp |
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| Protein Length | 489 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640934883 |
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| Product | succinic semialdehyde dehydrogenase |
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| Protein accession | YP_001475661 |
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| Protein GI | 157377061 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR01780] succinate-semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGATC TTAAAGACCC CAGTTTGGTT AAGCTCAGCT CTTATATCGA TGGCCGATGG
AGCGAGGCTG GTATTGCTTC CTCTGTCACT TTTGAAGTGA CCAACCCTGC TAATGATAGC
GTCGTTGCCA ATGTGCTTAA TGCCGGTATC GATGAAACCG AGGCGGCAGT ACTGGCTGCG
AAGAGAGCCC TTCCGGCCTG GTCTAAAAAG TCAGCTAACG AGCGAGCCGC CATACTCAGA
GCCTGGTTCA ACCTCATGAT GGCGAATCAA GATGACCTGG GACGGATCCT GACTCTGGAA
CAGGGTAAGC CCCTCGCCGA AGCGAAAGGT GAAATTGGTT ATGGTGCCGC TTTCATCGAA
TGGTTTGCCG AAGAGGGAAA GCGCGTCTAT GGAGATACGA TTCCGGCGCC ATCGGGTGAT
AAGCGCATCA TCGTCATTAA GCAGCCTGTG GGGGTTGTGG CATCTATCAC TCCCTGGAAC
TTTCCCAATG CCATGATCGC ACGTAAAGCG GCGGCGGCAT TAGCGGCAGG TTGTACTTTT
GTGGTTCGCC CTTCACCACT GACGCCACTG TCGGCGCTTG CCATGGCAGA GTTGGCCGAG
CGGGCGGGGA TCCCGGCCGG TGTATTAAAT GTCGTGGTGG GTGAAGATGC CGTAGGCATG
GGAGAAGTGC TGACGCAACA TCCCGATGTT TCAAAGTTTA CCTTTACTGG CTCGACGGCC
GTGGGCAAGA TTTTGATGAC GCAGAGCGCG ACGACTGTGA AGAAGGTCTC CATGGAGCTG
GGTGGTAATG CCCCCTTCAT CGTCTTCGAT GACGCGGACA TCGACGCTGC CGTGCAGGGA
GCACTCGTCT CTAAGTATCG TAATGCCGGC CAGACATGTG TCTGTACTAA TCGTATCTAT
CTCCAAAAAG GTATTGCTAA GGAGTTTACC GATAAATTTG CCACTGCGGT TGCGAACCTG
ACATTGGGAG ATGGACTCAG TGAAGGGGTG ACTATTGGCC CGATGATCTC ATCGACAGCG
GTGGATAACG TCAGCAAATT GGTCGCAGAC ACACTCGCCC AGGGCGGCAA ATTGTTAACC
GGTGGTCAGC GTAGCGAAGT GGGGGCTAAC TTCTTCGAAC CGACAATTGT CACCGGAGTC
ACCAATGAGA TGTCATTGGC ACGTAATGAG ATATTTGGCC CCGTGACGCC GATCATCAGC
TTCGATAACG AAGAGGAGGC GATCGCCATG GCCAACGATA CCGAATATGG ACTGGCGGCG
TATTTCTATT CCCGCGATAT TGGCCGAATC TGGCGAGTCG GTGAGGGGCT CGAATTTGGC
ATGGTGGGAG TAAACGAGGG CATTATCTCG AATGCCGCAG CGCCATTTGG CGGAGTAAAG
CAATCGGGGA ATGGTCGTGA AGGCTCTAAG TATGGTCTCG ACGATTATCT GGAGATCAAA
TACCTGTGCA TGGGTGGCTT GGACAGGTAA
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| Protein sequence | MQDLKDPSLV KLSSYIDGRW SEAGIASSVT FEVTNPANDS VVANVLNAGI DETEAAVLAA
KRALPAWSKK SANERAAILR AWFNLMMANQ DDLGRILTLE QGKPLAEAKG EIGYGAAFIE
WFAEEGKRVY GDTIPAPSGD KRIIVIKQPV GVVASITPWN FPNAMIARKA AAALAAGCTF
VVRPSPLTPL SALAMAELAE RAGIPAGVLN VVVGEDAVGM GEVLTQHPDV SKFTFTGSTA
VGKILMTQSA TTVKKVSMEL GGNAPFIVFD DADIDAAVQG ALVSKYRNAG QTCVCTNRIY
LQKGIAKEFT DKFATAVANL TLGDGLSEGV TIGPMISSTA VDNVSKLVAD TLAQGGKLLT
GGQRSEVGAN FFEPTIVTGV TNEMSLARNE IFGPVTPIIS FDNEEEAIAM ANDTEYGLAA
YFYSRDIGRI WRVGEGLEFG MVGVNEGIIS NAAAPFGGVK QSGNGREGSK YGLDDYLEIK
YLCMGGLDR
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