| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3925 |
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| Symbol | |
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| ID | 5612386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4794969 |
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| End bp | 4795967 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934879 |
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| Product | WD-40 repeat-containing protein |
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| Protein accession | YP_001475657 |
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| Protein GI | 157377057 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2319] FOG: WD40 repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCCCC TACTCTGCAT CTGTATAACA CTGAGTTTGA CAGCTTGCAG CGAACCTCCC
GCGGGGCAAA CATCATTATC GACAGATAGA TTGACCAGCG ATCGCGTGAT TGCGGCTCAA
CTATCCGATG ATGCGACGAT CTCGGCCCTC CTGACCCGAA AGCATCACCT TTCGGTATGG
GATAACGATT CGAAAAGCTT GATTCACGAA TGGAACGAGT CTGACTTCAT CGAAGAGCTC
TACCATATTT CACTGTCGGG AGATAAACGT CTGCTGGGCA CTGCGGGTAA GCATCGAGTG
TCGATTTTTG ATATCAAAAC AGGAAAGTTA ACCGTGACCT GGCAAGTTGA GGGATTCGAT
CCCGAGGCTG TCATCACCAG TCTGCACCTG AGCCATACGG GTAATGAGGT ACTCATCGGG
TTGAATGAAG GCTCGGTTAT TTCGGTGGAT CTGATTAGTA ATCAGATGTC GATGTTTCTG
GTTCACGATG GACCAGTCAC TCGTATCGAA TATGCGGCGC ACAACCAGCA GGTGATGTCG
GCATCACACG ATGGTCACGT GCTGTTCTGG GCTGCCACCA CAGGCAAGGT GATCCATGAA
TACTCCAATC AGTTCCGGAT AACCAGCGTC TCTTATGATG AAGCGAATCG AAAAATATTT
GTCGCCGATG CCCTGGATAA TCAATTCATC GCCGATTCGT TAACGACACA AGCCCTTAGC
CAACTCGACT ATCTGGAGCG CTACCGCTAT TTTCGTCAGG CGCTATTTGT CGAACGTGGC
CAGATGCTGA TCACCTCATC GTCTAAGCAG GAGTTGGCAA GTTGGGATGT TAAGACGGGA
AAAGAGTTGG CAAAGTGGAA CATCACCGCC TTCTCTGCCG GTACCACAGT GGTTTCAATG
GCCGTAGATA GCTCAGGAAC CCTATGGAGT CTGAGCTCCG ATGGCGCATT AGAGACCTGG
GATATTGAAT CAATTAATAT CTCCAGGTCG GGACTGTAA
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| Protein sequence | MLPLLCICIT LSLTACSEPP AGQTSLSTDR LTSDRVIAAQ LSDDATISAL LTRKHHLSVW
DNDSKSLIHE WNESDFIEEL YHISLSGDKR LLGTAGKHRV SIFDIKTGKL TVTWQVEGFD
PEAVITSLHL SHTGNEVLIG LNEGSVISVD LISNQMSMFL VHDGPVTRIE YAAHNQQVMS
ASHDGHVLFW AATTGKVIHE YSNQFRITSV SYDEANRKIF VADALDNQFI ADSLTTQALS
QLDYLERYRY FRQALFVERG QMLITSSSKQ ELASWDVKTG KELAKWNITA FSAGTTVVSM
AVDSSGTLWS LSSDGALETW DIESINISRS GL
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