| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3921 |
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| Symbol | |
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| ID | 5612643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4790860 |
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| End bp | 4791756 |
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| Gene Length | 897 bp |
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| Protein Length | 298 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640934875 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_001475653 |
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| Protein GI | 157377053 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCAA ACCCCGCTTG TGAGCTGCAA TTAATCTACC TTTTTGTCCA TCTGGTCAAT
ACGGGTGGGT TCTCTCAAGT CGCTAAAGCG CTAAACATGC CAATCGCGAC GGTGAGCCGT
AAGGTACATA AGCTTGAGGA GAGCCTGGAT ACCCAACTTA TCATGCGTAG CACACGAAAA
CTGCGCTTGA CCGAAGAGGG CGAGGCGCTT TTTAAACGCT ATCAGGATGC CATATCTCAA
TTCGATAACT GCTCAGATTC AGTGATTAAT AAACCGGAAG GGACGCTGAG AATTGCGGCG
CCGGTATCGA TCATTTCAAT GATATTTATC GGTGCGTTAA ATGAATTTTC TAAAATGCAC
CCCGATATTC AACTGCATAT AGCCCAAAAT AATAATGCTA TAGATCTGGT TGAAGAGGGA
GTCGATATTG CTATCGTCGG TGGTGCTCAA CCTGACTCAT CTTGGGTATC GAACTCACTG
GGTGTACTCA ACTATGGTCT GTATGCCTCA CCGAGCTATT TAACGCAGGC CGCAGAGATC
GACCACCCAA ATCAACTGAA GCAACACGCC TTAATCAAGG TGTGGCCCCT GTTTAACTGG
ACGTTGAAAC ACCGAAGTGG TGAAGATTTT TACTATGATG GCCCGGCCAA ACTTACCTTA
GGTGATCTGT ATGGTGCTGT CCATGCCGCC GTAGATGACG GTGGCATCTT GTATGGACCC
GAGTTATTTG TAAAGCAGCA GGTAAAATCC GGACAGCTGG TCGAGGTACT GCCTGAGTGG
ACAGGAGAGC AGCGACGGAT CTCCATGTTG TATCATCAAC GTAGCCAGCA ACCTCTTAAG
GTCAAACTCT TTATTGAATT TATGCAGTCA AAAGCTCAAG AGCTTTTTAC GGTATAG
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| Protein sequence | MSSNPACELQ LIYLFVHLVN TGGFSQVAKA LNMPIATVSR KVHKLEESLD TQLIMRSTRK
LRLTEEGEAL FKRYQDAISQ FDNCSDSVIN KPEGTLRIAA PVSIISMIFI GALNEFSKMH
PDIQLHIAQN NNAIDLVEEG VDIAIVGGAQ PDSSWVSNSL GVLNYGLYAS PSYLTQAAEI
DHPNQLKQHA LIKVWPLFNW TLKHRSGEDF YYDGPAKLTL GDLYGAVHAA VDDGGILYGP
ELFVKQQVKS GQLVEVLPEW TGEQRRISML YHQRSQQPLK VKLFIEFMQS KAQELFTV
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