| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3919 |
|---|
| Symbol | |
|---|
| ID | 5611743 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4787501 |
|---|
| End bp | 4789549 |
|---|
| Gene Length | 2049 bp |
|---|
| Protein Length | 682 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934873 |
|---|
| Product | cyclic nucleotide-binding protein |
|---|
| Protein accession | YP_001475651 |
|---|
| Protein GI | 157377051 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0025] NhaP-type Na+/H+ and K+/H+ antiporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATGC AAACGACCTT GCTGCTGTTG GTCTTTTTTG TGATAGCGAT ATTATTGGGA
ATAATATTGC GCAGGTTACT GAAAAATACT GCGATCCCAT ACTCGGTAGC CCTGTTGTTG
CTCGGCATGT TAATTGGTAC CAGCCTGAAT GTTGACTCGC ATATCCCGGT CCTCAATGAA
CTCAACTCGG CGTTTGTTCT CGCCAGCCAG TTAGATGCCA ATCTGATTAT GTTTATCTTC
CTGCCTGCAC TGGTGTTTGA GTCGGCTTTC TCCCTCGAGG TGCACCTGTT TAAACGTATG
TTCTCTCAAA TTGCGGTATT GGCCATTCCC GGCTTGGTGA TCTGTACCCT GTTTACGGCC
ATCTTAAGCC TGACTGTGCT GCCCTGGCAT TGGTCTCTCG GTACCGCCTT GATGTTTGGT
GCGATAGTGA GTGCGACCGA TCCCGTCGCC GTTGTTTCTC TGCTCAAAGA GATGTGTTCG
CGAGTCAGAT TGCAGACATT AATCGAGGGG GAGTCGCTGC TCAATGACGG TACGGCTATC
GTTTTATTTA CCCTTTTTCT CTCTCTGGCG ACACAGGTCA AACCCGAGTT CAATACCCTG
GAGGTGATCT ATGAGTTCTT TCGTGTCGTT TCTATCGGAG TGCTCATAGG GGCTGTGGTC
GCAGCGATAA GCCTCAAGTT TATCGGTTCT ATCTTCAATG ACAGTCTGAT TGAGATCGCG
CTGACATTGG TGTTGCCCTA TCTGGTTTTT TATCTGTCAG AGCACCTGTT TCATGCTTCT
GGTGTCGTGA GTGTCGTTAC CCTTGCCCTG ATCTATGCGG GCCCTGGGCG AACACGCTTT
TCTCCCGAGG TGATGGAGCA TCTGCACCAT TTCTGGCATA CCCTCTCTTT TCTCTTCAAT
ACCCTGATTT TTATTCTGGT GGGATTAGTC GTCTCTACTC GCTTGGGTAT CGCAGATCTC
GCCAATTGGC AATACTTGGC GGTTATCTTT GCCGGGATCT TAGTGATCCG TACCATGGTG
ATTGTCGGCC TGATGCCGAT TCTGGGCAGG ATAGGGATAG GCCTGACGAA GGAGAAGTCA
ATTGTATTGA TATGGGGCGG ATTGCGTGGC GCCGTCTCGT TAGCTCTGGC CCTTATCGTT
GCCACCAACG AGTCCTTGGA TATTCAACTG CGGGATCAGG TCCTGTTTCT GACCGCAGGC
ATAGTGGTAT TAACCATCAT AGTGAATGGC TCATCCATGC GCTTCGTGAT GGCAAAGTTA
GGCTTAGATA AACTCCCTAA GGCCAAGCAG CAGGCGTTTG CCAAAGTGCA GCATAAGATC
TCCGATGAGA TCATCACGGT GAGGGAGCGG TTACATGCCG ATGAGCACCT GAAAGCCGTT
AACTGGCCTC TGGTAGATAA AAATATCGTG TCGGTCTGTG AGCCCTTTGA AGATGAACAG
AGTTTAGATA CGGAGGTTGA ATTTTTACGT AAACTATTGG AATCGGAGCG ACAGTTTTAC
TGGAATCAAT TTGGCAAGGG CTTACTGAGT CAGGATGCGA CCCATATTCT GGTCGAGGCC
ATAGAAAAGG CGCTCGATGG TACGCCTAAA ATATGGCCCA GAAGTTCGAT AGAGAAACAC
TGGACAATTC CAACCTGGTC CCTGCGCTGC GGTTCAGTCC CCCTTATTGG AGCCTATGCT
CGCGGCGTAA GCTACCGACA ACATATCATC ATCTTCGAGA GTGCCAGAGG GTTATTCGAG
TCGAGCCAGT ATATCCTGGA ACTGGCGCCT AGTTTGTCAC TGGAGCCTGC CCATCTTGAG
CAAGCCATGA AGCAGATAAG ACAAGTGAAT TTATTTGCGC AGAATACCTT GAATGATTTC
AGACAAAAAT CACCGCATCT GGTCGAGCGG GTCGAGTCAT ATCTCGCGTT GCGGATCTTG
TTAAATACAG AGCGCAAGAT GATACAGGAG CTATCTCATG AGGGGATGAT CTCTGAGGTC
GATGCAGAAA AACTGATCGA AGCCGTCGAA TTTAAGATGC ATCAAAGTAA GAAGCAGAGA
GCCGACTGA
|
|---|
| Protein sequence | MHMQTTLLLL VFFVIAILLG IILRRLLKNT AIPYSVALLL LGMLIGTSLN VDSHIPVLNE
LNSAFVLASQ LDANLIMFIF LPALVFESAF SLEVHLFKRM FSQIAVLAIP GLVICTLFTA
ILSLTVLPWH WSLGTALMFG AIVSATDPVA VVSLLKEMCS RVRLQTLIEG ESLLNDGTAI
VLFTLFLSLA TQVKPEFNTL EVIYEFFRVV SIGVLIGAVV AAISLKFIGS IFNDSLIEIA
LTLVLPYLVF YLSEHLFHAS GVVSVVTLAL IYAGPGRTRF SPEVMEHLHH FWHTLSFLFN
TLIFILVGLV VSTRLGIADL ANWQYLAVIF AGILVIRTMV IVGLMPILGR IGIGLTKEKS
IVLIWGGLRG AVSLALALIV ATNESLDIQL RDQVLFLTAG IVVLTIIVNG SSMRFVMAKL
GLDKLPKAKQ QAFAKVQHKI SDEIITVRER LHADEHLKAV NWPLVDKNIV SVCEPFEDEQ
SLDTEVEFLR KLLESERQFY WNQFGKGLLS QDATHILVEA IEKALDGTPK IWPRSSIEKH
WTIPTWSLRC GSVPLIGAYA RGVSYRQHII IFESARGLFE SSQYILELAP SLSLEPAHLE
QAMKQIRQVN LFAQNTLNDF RQKSPHLVER VESYLALRIL LNTERKMIQE LSHEGMISEV
DAEKLIEAVE FKMHQSKKQR AD
|
|---|
| |