| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3863 |
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| Symbol | |
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| ID | 5611603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4713451 |
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| End bp | 4715046 |
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| Gene Length | 1596 bp |
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| Protein Length | 531 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640934817 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_001475595 |
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| Protein GI | 157376995 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTAATAG CAGATCCGAT TGAAGAGGGA CTGGCCTCGG GCTGGAAACA TATCGATGCC
AGCCTGTTAA ATGAGAGTCA AACTCTCGAG GCCGATGTCG TTATCGTTGG CAGCGGTGCC
GGTGGCGGTG TCGCCGCCGA GATATTAACC GATGCCGGCT TGACGGTTAT TATTATTGAG
GGAGGTCCAC TGAAATCATC CCGAAGTTTT AATATGGAGG AGCGGCGCGC CTATCCTAAT
CTCTACCACC AAGCGGCCGC CATGAAAACG AAAGATAAGG CGATTGGCAT CTTTCAGGGC
AGGGCCGTGG GCGGCTCGAC CACCGTCAAT TGGACCACCT CTATCAGAAC ACCCAAAAAG
GCCTTGGATT ATTGGGCTAA AGACAAGTCG GTTAAAGGCT TGTCCAGAGA GGAGTTGGAT
CCCTGGTTTG AGAAGATGGA GCAACGCCTG AATATTTCTG AGTGGCCATT TGCGCCCAAT
AGAAATAATG ATGCATTAAA AACCGGCTGT GAAAAACTGA ATTGGGATTT CACCGTGATT
AAACGCAACG TCAAAGGGTG CTGGAATACG GGATATTGCG GCATGGGATG CCCAGTGAAT
GCGAAACAAT CTATGTTGGT CACCACCATT CCGGCGGCAC TTGAAAAAGG AGCGACCCTG
GTGAGTCGCG CCAAAGTGGT AAAGTTAGAG CATCACAAGG ATAAGATCTT CGCGGCTAAG
GCCATCGCGC TGGATGAGAA CCTGAAGCCC ACCTCCGTGG AGTTAACCTT TAAGGCTAAG
CACTATATTA TTGCGGCGGG TGCCATACAC ACGCCGACAT TATTGATGCG CTCCGGCGTC
ACCGATCCCA ATCAAATACT CGGCAAGCGT ACCTTCCTGC ATCCAAGCCT GTTGAGTGGG
GCTATTTTTA GTGATCCCAT TAATGCCCAC AGTGGCGCAC CTCAGTCCAT CTATTCCGAC
GAGTTTGTCT GGCGCGACGG CGCAGACGGT CAGCTGGGTT ATAAGTTAGA GGTGCCTCCG
GTTCACCCTA TTCTTATCGG TTCGAAAACA TTGGGTTACG GTAAGAGTCA TGCCGAATTA
ATGGCCAACT TTAATCAACT TCAGGTGACG ATAGCTCTGG TCAGAGACGG CTATCATGAG
CAGAGTCGGG GGGGGCAGGT ACATCTGACC GATAAGGGGT TTACCTTGGA TTACCCTCTG
ACCGCGGAAT TTTGGAATGC GGCAAGAAGG GCGTTTTCCA GCATGGCCGA ACTACAGTTT
GCCGCAGGAG CTAAACAGGT ACTGCCGATA AGCGAAGGGA TGCCCTACCT GAACAGCTGG
GCCGAGGCCA AGACTAAGAT AGAGACGATG GAGTTAGCGC CGCTGAAAAC AGTGGTTGCT
TCGGCGCATG TTATGGGGGG CTGTCCCATG GGGGAAGACC TCAAAATGTC TATGGTCGAT
AGTCATGGAC AGTCTCATTA CTATGAAAAC ATGTCTGTTA TGGATGGTTC TATCTTTCCC
ACCAGTTTAG GTGCCAACCC ACAACTGTCT ATCTATGGCA TGACGGCAAG AAACGCGACA
CGTTTGGCCG AGCGACTAAC CTCATCTAAG AGCTAG
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| Protein sequence | MVIADPIEEG LASGWKHIDA SLLNESQTLE ADVVIVGSGA GGGVAAEILT DAGLTVIIIE
GGPLKSSRSF NMEERRAYPN LYHQAAAMKT KDKAIGIFQG RAVGGSTTVN WTTSIRTPKK
ALDYWAKDKS VKGLSREELD PWFEKMEQRL NISEWPFAPN RNNDALKTGC EKLNWDFTVI
KRNVKGCWNT GYCGMGCPVN AKQSMLVTTI PAALEKGATL VSRAKVVKLE HHKDKIFAAK
AIALDENLKP TSVELTFKAK HYIIAAGAIH TPTLLMRSGV TDPNQILGKR TFLHPSLLSG
AIFSDPINAH SGAPQSIYSD EFVWRDGADG QLGYKLEVPP VHPILIGSKT LGYGKSHAEL
MANFNQLQVT IALVRDGYHE QSRGGQVHLT DKGFTLDYPL TAEFWNAARR AFSSMAELQF
AAGAKQVLPI SEGMPYLNSW AEAKTKIETM ELAPLKTVVA SAHVMGGCPM GEDLKMSMVD
SHGQSHYYEN MSVMDGSIFP TSLGANPQLS IYGMTARNAT RLAERLTSSK S
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