| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3854 |
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| Symbol | |
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| ID | 5611658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4701668 |
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| End bp | 4703077 |
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| Gene Length | 1410 bp |
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| Protein Length | 469 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934808 |
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| Product | major facilitator transporter |
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| Protein accession | YP_001475586 |
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| Protein GI | 157376986 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.447345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAACA ATACGTCCTC ATCGACGCAG CAGGGTTTTC CAAAAACATT TTGGATTGCC
AACGGCGTCG AACTTTTAGA GCGCGCCGCC TATTATGGCG TGTTCATTGT GATCACCCTT
TATTTATCAC GTATCTTAGG GTTTACCGAT GTTGAGGCCG CATGGCTTGC CGGTTCTTTC
TCCGCGGGTC TCTATTTTCT GCCGACCTTT AGTGGGGCAC TGGCAGACAA AATCGGCTTC
AGGGGAGCGT TACTGCTGGC CTTCGGTCTG CTTACAATAG GTTATTCCGG CCTTGCACTT
TTCCCTGCAC TGTTAGAGGG ACAAGGGCTG GTTGAATATG GTAAGGAGGC GACCTATCAC
GGACTGAAAG AAGCCGATAT TCGCTGGGCC ATCGTGCCAA TTCTTATCGT TATCATGATT
GGTGGTTCAT TTATCAAGGC GGTGATCACG GCTACCGTGG CTAAGTGTAC GACTACCGCT
AACCGTGCCA AAGGTTTCTC GATCTTCTAT ATGATGGTTA ATATTGGCGC CTTCTCCGGT
AAAACAGTGG TTAAACCTCT GCGTGAGTCC ATGGGTGATC TCGGTTTAAT CAACCTCAAC
TATTTCGCTG CCAGCATGAC GCTGATTGCG TTTATCAGTA TCTTTATCTT CTTCAAAAAT
GCCGAGACCA ACAGCGAAGG AAAGTCTCTG GCTGAAATAT GGTCCGCACT TACCAGAGTA
CTGAGTAATG GCCGATTAAT CTCACTGACC GTTATTATCA GTGGTTTCTG GATGGTGCAG
CATCAGCTGT ATGCGACTAT GCCTAAGTAT GTATTGCGTA TGGCGGGTGA GGGCTCTTCG
CCATCTTGGT ATGCCAACGT AAACCCGTTA GTGGTATTTC TGTCGGTCAG TCTCGTGACT
GCCATGATGA GCAAACGTAG TGCGCTCTCT TCAATGACTA TCGGTATGTT TATCATGCCT
GTCTCGGCGC TTCTGATGGC ATCGGGTAAT ATGTTTGCCG GTACAGAAAC CATCTTAGGC
ATGCACCCGA TTGCGGCTAT GATGATTATC GGTATCGTGT TCCAGGGTTT GGCCGAGTGT
TTCATCTCGC CGCGCTTCCT CGAATACTTC TCGCTGCAGG CACCTAAGGG AGAGGAGGGA
CTCTACCTTG GTTTCTCACA CTTGCACTCT TTCATCAGCT CGCTGTTAGG CTTCGGTCTG
TCAGGATACC TGCTTCAGGC ATATTGTCCG GATCCTCGTA CTTTCGATAC CCATGTTGAA
TGGGCTGCTG CGGCATCGCA TGCACATTAC ATCTGGTACT TCTTTGCCGC TATTGCAACG
GTTTCAGCTG TCTCCTTGAT AATCTATGGC GTCGTGATTA AGCGCTTAGA TGCGAATAAG
ACAGAAGAAG TTGAGCTCGC TACGGCTTAG
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| Protein sequence | MTNNTSSSTQ QGFPKTFWIA NGVELLERAA YYGVFIVITL YLSRILGFTD VEAAWLAGSF
SAGLYFLPTF SGALADKIGF RGALLLAFGL LTIGYSGLAL FPALLEGQGL VEYGKEATYH
GLKEADIRWA IVPILIVIMI GGSFIKAVIT ATVAKCTTTA NRAKGFSIFY MMVNIGAFSG
KTVVKPLRES MGDLGLINLN YFAASMTLIA FISIFIFFKN AETNSEGKSL AEIWSALTRV
LSNGRLISLT VIISGFWMVQ HQLYATMPKY VLRMAGEGSS PSWYANVNPL VVFLSVSLVT
AMMSKRSALS SMTIGMFIMP VSALLMASGN MFAGTETILG MHPIAAMMII GIVFQGLAEC
FISPRFLEYF SLQAPKGEEG LYLGFSHLHS FISSLLGFGL SGYLLQAYCP DPRTFDTHVE
WAAAASHAHY IWYFFAAIAT VSAVSLIIYG VVIKRLDANK TEEVELATA
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