| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3836 |
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| Symbol | |
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| ID | 5612739 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4677484 |
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| End bp | 4679271 |
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| Gene Length | 1788 bp |
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| Protein Length | 595 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640934790 |
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| Product | spermidine synthase |
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| Protein accession | YP_001475568 |
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| Protein GI | 157376968 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0396024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.000000000324026 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | GTGAGTGAAG TGACGAGTTC CAAACTAACC CAACCTGAAG AAAGCCTGCC TGATGTGAAG
GATCTATCCC CTGCACTAGG CACAAATACC ATAGGCAGAG AACGAAAGTT AAGCTGGTTC
GACGACACCT TGCTACTCGG CATAATGGCC GTATTAGCAG GCTGTGGCTT GATCTATGAA
TACCTTCTCT CTCACTATGC GGGTCGAATT CTGGGAGCAT TAGAAGCTGC TATTTATACC
ATGATAGGCC TGATGATCGT CTCCATGGGA GTCGGTGCCT TTGCCGCCAG GAAAATACGT
TGTGCCTTTA CCGGTTTTGC CGTTCTGGAG CTCAGCGTCG CCCTGTGCGG CTCCCTGGCG
ATACTCATCA CCGCCGCGAT TATCGGTTTC GGTCAGCAAC TACCACTCAT TATCGCCAGC
ACGTTAGGCC TGCCGCCAGA TCAGCTACCC GAAGGTGGCT TTATCGGCTT GCTTCAGCAC
CTGAGTGAAT ACCTGCCTTA CTTCTGGGGC GTATTGCTCG GCTTGATGAT AGGTATGGAG
ATCCCGCTCA TTGCGCGTGT AAGACAGTCT TTATGTGATG AACACCTGAT GCACAATGCT
GGCACCATCT ATGGCGCCGA TTACATTGGT GCGGGTATCG GTGCTGCCAT CTGGGTCAGC
TTCATGTTAG CTATCGACAT CCAGCTGGCT GCCGCCTTAA CAGCCAGCTT TAATCTCTTG
GCCGGCTTTA TCTTTATCTG GCGCTTCTGG GATCGAATTA GATTTGTTAA AACCCTACTT
GTAGGCCATT TTATCGCCAG TGGCATTCTG TTGATGTTGG CCTGGCATGG CCCGGGCTGG
GAGCAAAACT TTAATAACCT GCTCTATAAA GATGAAGTGA TCTACGCCAA ATCTACTCGC
TTCCAACAAC TGACATTTAC CGAGAGGCTC AGAGGCAGCG GCCTGGAACC GGTGTACTCT
CTGTATATCA ATGGAAGGTT GCAGTTCTCC AGTCAGGATG AGCATATCTA TCATGCGTTT
TTAGTCCATC CGACACTGGA AGCCAGCGCA CGTCATAATA AGGTATTAAT CATAGGTGGA
GGCGACGGTT TAGGGCTAAA ACAGGTACTA AAATGGCAGC CTGAGCAGGT CACCCTGATG
GATCTGGACC GGGATCTTCT CGAGCTATTT ACCTCTCATG ATGCAGACAT GCCCACTCGA
TTAAGTCAGA CCCTGCTAAA ACTGAACGGT GACGCACTCA ATGATCCCAG AGTCGAGGTC
GTTGTCGACG ATGCCTTTAA CGGAGTCGAT AAGCTGCTGA AGAGGGGCGA CAGGTATGAT
GCCATCATCG TCGACTTGCC CGATCCCAGC CATCCAGATC TCAACAAGCT ATACTCAGAT
CTTTTTTATA AGAAACTGAA GGAACTCTTA AGCAGTGATG GTGCTCTAAC GGTACAGTCG
ACCTCGCCTT ATCATGCCCC TAAGGCCTTT ATATCCGTCG GGAAAACGTT AGCACTGGCA
GGCTTCAATG TCAGCCAATA CCATCACAAT GTACCCAGTT TTGGTGAATG GGGTTGGAGC
ATAGCCACAG CATCGGGCAA GAGTGCTAAA AACAGATTAA GCGATATTGA ACACCTATCC
ATAGAAGACG ATTGGTTAAC ACCAGGACTC ATTAAAGGGT CATTTGAGTT CCCGGGCAAC
TTCTATCAGG ATATGGATAA GATCGAGCCC AACCGCATAG GCTCTATGCA ACTGTACCAA
TATCACCAAA AGGCATGGAC AGAAAATCAA GGCGTCACAC TTTTCTGA
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| Protein sequence | MSEVTSSKLT QPEESLPDVK DLSPALGTNT IGRERKLSWF DDTLLLGIMA VLAGCGLIYE
YLLSHYAGRI LGALEAAIYT MIGLMIVSMG VGAFAARKIR CAFTGFAVLE LSVALCGSLA
ILITAAIIGF GQQLPLIIAS TLGLPPDQLP EGGFIGLLQH LSEYLPYFWG VLLGLMIGME
IPLIARVRQS LCDEHLMHNA GTIYGADYIG AGIGAAIWVS FMLAIDIQLA AALTASFNLL
AGFIFIWRFW DRIRFVKTLL VGHFIASGIL LMLAWHGPGW EQNFNNLLYK DEVIYAKSTR
FQQLTFTERL RGSGLEPVYS LYINGRLQFS SQDEHIYHAF LVHPTLEASA RHNKVLIIGG
GDGLGLKQVL KWQPEQVTLM DLDRDLLELF TSHDADMPTR LSQTLLKLNG DALNDPRVEV
VVDDAFNGVD KLLKRGDRYD AIIVDLPDPS HPDLNKLYSD LFYKKLKELL SSDGALTVQS
TSPYHAPKAF ISVGKTLALA GFNVSQYHHN VPSFGEWGWS IATASGKSAK NRLSDIEHLS
IEDDWLTPGL IKGSFEFPGN FYQDMDKIEP NRIGSMQLYQ YHQKAWTENQ GVTLF
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