| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3786 |
|---|
| Symbol | |
|---|
| ID | 5612848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4615644 |
|---|
| End bp | 4616303 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934740 |
|---|
| Product | heat shock protein DnaJ domain-containing protein |
|---|
| Protein accession | YP_001475518 |
|---|
| Protein GI | 157376918 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTTG CCAAAAATTC AACGACGCTC CCGGCCCTTT CTGATTCGAC ATCGGTAGCC
GATATCTCTG TTATCAAAGG TGATAACCCC CTTATCTGGC CACTACTCAG CTTACTACAG
ACCTCAAATA AGAGCTGGAA AGTCCATCAC CTGGCATCCG AATTACAAAA TAAAGGCTTG
ATGCAAGATC TCGATGAGGA TCAACAAAAA GCCCTCTTCA AGCGCAATTT TCTGTTGATG
AACGCCCTGT TTGAGCTCCA GGCTATGCTA TTGCCACAAC ACTGGCTCCA GGTTAAGGCG
ATGGAGATCC AAATATTTCG AATCATCCCC AGAAATTTAG ATTCCAGCCT CAGAGAAGAT
GATGCACTGA GAGAGTATTA CCTTAACTGG ATTAACTACG ATACCTGTCC CAATATCATA
CAAGAGATGC TCGAGTCCTT CTGGAACCGT TATGAAGATT ATATCGGTAC CAACCCAAAC
TTGATGCATA AGGGTCAGGC GCTGGCCGTA TTCGAGCTGG ATATGAATGC CACAGACAGG
GAAGTGCGGC GCCAGTGGCG TAAACTGGCA CTGAAGTGGC ACCCTGACCG TCCCGATGGC
AATGCGGCTC AATTTCGAAA AGTGTGTGAA GCCTGGCAAG CTTTAAGAGA GAAATATTAA
|
|---|
| Protein sequence | MLFAKNSTTL PALSDSTSVA DISVIKGDNP LIWPLLSLLQ TSNKSWKVHH LASELQNKGL
MQDLDEDQQK ALFKRNFLLM NALFELQAML LPQHWLQVKA MEIQIFRIIP RNLDSSLRED
DALREYYLNW INYDTCPNII QEMLESFWNR YEDYIGTNPN LMHKGQALAV FELDMNATDR
EVRRQWRKLA LKWHPDRPDG NAAQFRKVCE AWQALREKY
|
|---|
| |