| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3724 |
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| Symbol | |
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| ID | 5610666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4530608 |
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| End bp | 4531870 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640934677 |
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| Product | RND family efflux transporter MFP subunit |
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| Protein accession | YP_001475456 |
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| Protein GI | 157376856 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.376754 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCAGG ATACGAGCGG ACAGGACACG GTAATAGAGG CGAGTCTGAC AAAAAAGTTG
AAATGGCCTC TGTTGACAGG CGTTGTCGTG TTGCTGGTAT CTGGCCTAGT TTGGTCAAGT
GTCGGTGGCA GTCAGGTGAG CGAGTCTATT AGCCGAAGTG AGCTTAGATT TGCGACACTG
GAGCAGGGCA CACTCACACG AGATATCGCC ACAACGGGTA AAATCGTCGC CGCGAATGCC
CCCATCCTCT ATAGCAGCGA TCAAGGTACG GTCACACTAC TGGCGAAGCC CGGCGACAGA
GTCGAAAAGG GCGATGTGGT CGCGACTATC GAGAGTCACA AGCTCACCAA TAGTCTGAAA
CAGCAGGAAG CTCTGTTAGA AGGGATGAAA AGCGCATTAG AGCGTGCCCG TCTCGATGCC
CGCCGTCAAC AGCTAAAGGC ACAGCAGACT ATCGATATGG CTAAGGTCGA CCTTGCCGCC
GCCGATCGTG AGAGTCGTCG TGGTGATGAG CTTATCCATA ACAAGCTCAT CTCTAAGATA
GATTTTGAGA AAGGCAAAGA CGACCTCCAT AAGGCCAAGC TGCTTTCGGC TCATGCGAAG
CAGGAAGCCG AGCTGATGAA AGATACACTC ACCTTCGAGA TTAAGAATAA AGCCGCTGAG
GTTAATCGTC AGGCATTGGT CGTGACAGAG CTTGAGCGTC AGGTTGGAGC CTTGAGTATT
GAGGCGCCGG TGGGCGGCAT TATCGGTAAC TGGCTAACGG ATCAGAAAGC CCGCGTCGCT
CAGAGCCAAC CCATTCTGAC CGTAGTCGAT TTGAGCGCCT TCGAGGCAGA GCTGGCCGTC
CCAGAGTCTT ACGCCGATGA GCTGGGCTTA GGTATGGATG TCGAACTGAG TTTCGGCTCT
GTGACATTGA TGGGCCAACT CTCCTCAATT TCTCCGGAAG TAAGAAATCG TGAAGTGACC
GCCCGAGTGC GATTCGAGCA AGATGAGCGC CTTCATTTGC GTCAAAACCA AAGACTATCG
GCGCGGGTAT TACTGGAAAA CAGACCTAAT GTATTGATGG TAAAGCGTGG TGCCTTTGTT
TCAACCGGTG GTGGTAGAGA GGTGTATGTC ATGAGCGGTG ATATCGCTGA GCAGACTTCA
ATTCAACTCG GCGCCCGCAG TATGAGCCAT ATCGAGGTGC TACAAGGCGG TAAGGCTGGT
GATGTGTGGG TTATCTCGAG CATTCAACCA TTTAAGAAAG CAGAACAAGT GCTGGTTCGC
TAA
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| Protein sequence | MIQDTSGQDT VIEASLTKKL KWPLLTGVVV LLVSGLVWSS VGGSQVSESI SRSELRFATL
EQGTLTRDIA TTGKIVAANA PILYSSDQGT VTLLAKPGDR VEKGDVVATI ESHKLTNSLK
QQEALLEGMK SALERARLDA RRQQLKAQQT IDMAKVDLAA ADRESRRGDE LIHNKLISKI
DFEKGKDDLH KAKLLSAHAK QEAELMKDTL TFEIKNKAAE VNRQALVVTE LERQVGALSI
EAPVGGIIGN WLTDQKARVA QSQPILTVVD LSAFEAELAV PESYADELGL GMDVELSFGS
VTLMGQLSSI SPEVRNREVT ARVRFEQDER LHLRQNQRLS ARVLLENRPN VLMVKRGAFV
STGGGREVYV MSGDIAEQTS IQLGARSMSH IEVLQGGKAG DVWVISSIQP FKKAEQVLVR
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